geneSLOPE: Genome-Wide Association Study with SLOPE

Genome-wide association study (GWAS) performed with SLOPE, short for Sorted L-One Penalized Estimation, a method for estimating the vector of coefficients in linear model. In the first step of GWAS, SNPs are clumped according to their correlations and distances. Then, SLOPE is performed on data where each clump has one representative.

Install the latest version of this package by entering the following in R:
install.packages("geneSLOPE")
AuthorDamian Brzyski [aut], Christine Peterson [aut], Emmanuel J. Candes [aut], Malgorzata Bogdan [aut], Chiara Sabatti [aut], Piotr Sobczyk [cre, aut]
Date of publication2016-10-26 15:43:08
MaintainerPiotr Sobczyk <piotr.sobczyk@pwr.edu.pl>
LicenseGPL-3
Version0.37.0
https://github.com/psobczyk/geneSLOPE

View on CRAN

Functions

clumpingResult Man page
clump_snps Man page
geneSLOPE Man page
geneSLOPE-package Man page
gui_geneSLOPE Man page
identify_clump Man page
identify_clump.clumpingResult Man page
identify_clump.selectionResult Man page
phenotypeData Man page
plot.clumpingResult Man page
plot.selectionResult Man page
print.clumpingResult Man page
print.phenotypeData Man page
print.screeningResult Man page
print.selectionResult Man page
read_phenotype Man page
screeningResult Man page
screen_snps Man page
selectionResult Man page
select_snps Man page
summary.clumpingResult Man page
summary.phenotypeData Man page
summary.screeningResult Man page
summary.selectionResult Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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