A result of procedure for snp clumping produced by clump_snps
Always a named list of eleven elements
X
numeric matrix, consists of one snp representative for each clump
y
numeric vector, phenotype
SNPnumber
numeric vector, which columns in SNP matrix X_all
are related to clumps representatives
SNPclumps
list of numeric vectors, which columns in SNP matrix
X_all
are related to clump members
X_info
data.frame, mapping information about SNPs from .map file.
Copied from the result of screening procedure.
selectedSnpsNumbers
numeric vector, which rows of X_info
matrix are related to selected clump representatives
X_all
numeric matrix, all the snps that passed screening procedure
numberOfSnps
numeric, total number of SNPs before screening procedure
selectedSnpsNumbersScreening
numeric vector, which rows of X_info
data.frame are related to snps that passed screening
pVals
numeric vector, p-values from marginal tests for each snp
pValMax
numeric, p-value used in screening procedure
screeningResult
clump_snps
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