A result of procedure for snp clumping produced by
Always a named list of eleven elements
X numeric matrix, consists of one snp representative for each clump
y numeric vector, phenotype
SNPnumber numeric vector, which columns in SNP matrix
are related to clumps representatives
SNPclumps list of numeric vectors, which columns in SNP matrix
X_all are related to clump members
X_info data.frame, mapping information about SNPs from .map file.
Copied from the result of screening procedure.
selectedSnpsNumbers numeric vector, which rows of
matrix are related to selected clump representatives
X_all numeric matrix, all the snps that passed screening procedure
numberOfSnps numeric, total number of SNPs before screening procedure
selectedSnpsNumbersScreening numeric vector, which rows of
data.frame are related to snps that passed screening
pVals numeric vector, p-values from marginal tests for each snp
pValMax numeric, p-value used in screening procedure
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