screeningResult: screeningResult class

Description Details See Also

Description

A result of procedure for snp clumping produced by screen_snps

Details

Always a named list of eight elements

  1. X numeric matrix, consists of snps that passed screening

  2. y numeric vector, phenotype

  3. X_info data.frame, SNP info from .map file

  4. pVals numeric vector, p-values from marginal tests for each snp

  5. numberOfSnps numeric, total number of SNPs in .raw file

  6. selectedSnpsNumbers numeric vector, which rows of X_info data.frame are related to snps that passed screening

  7. pValMax numeric, p-value used in screening procedure

  8. phenotypeInfo data.frame, additional information about observations provied in phenotypeData object

See Also

phenotypeData screen_snps


geneSLOPE documentation built on May 30, 2017, 1:22 a.m.