geneSignatureFinder: A Gene-signatures finder tools

A tool for finding an ensemble gene-signature by a steepest ascending algorithm partially supervised by survival time data.

AuthorStefano M. Pagnotta, Michele Ceccarelli
Date of publication2014-03-07 11:58:47
MaintainerStefano M. Pagnotta <pagnotta@unisannio.it>
LicenseGPL-2
Version2014.02.17
http://www.bioinformatics.unisannio.it/gsf

View on CRAN

Functions

BHcorrection Man page
BICs Man page
classify Man page
ensembleTable Man page
geNSCLC Man page
goodAndPoorClassification Man page
importance Man page
NCPUS Man page
puttingAllTogether Man page
removeGeneFrom Man page
searchResultsSummaryTable Man page
seedsFinder Man page
signatureFinder Man page
signatureSummaryTable Man page
stNSCLC Man page
testGE Man page

Files

geneSignatureFinder
geneSignatureFinder/NAMESPACE
geneSignatureFinder/data
geneSignatureFinder/data/geNSCLC.rda
geneSignatureFinder/data/stNSCLC.rda
geneSignatureFinder/R
geneSignatureFinder/R/print.gSignature.R geneSignatureFinder/R/goodAndPoorClassification.R geneSignatureFinder/R/geneSignatureFinder-internal.R geneSignatureFinder/R/ensembleTable.R geneSignatureFinder/R/mergeSignatures.R geneSignatureFinder/R/evaluateGeneSequence.R geneSignatureFinder/R/puttingAllTogether.R geneSignatureFinder/R/plot.gSignature.R geneSignatureFinder/R/signatureFinder.R geneSignatureFinder/R/pValueFun.R geneSignatureFinder/R/areDataNotLoaded.R geneSignatureFinder/R/dMixNorm.R geneSignatureFinder/R/parallelSignatureFinder.R geneSignatureFinder/R/searchResultsSummaryTable.R geneSignatureFinder/R/sequentialSignatureFinder.R geneSignatureFinder/R/pamUnbiased.R geneSignatureFinder/R/parallelFindBest.R geneSignatureFinder/R/testGE.R geneSignatureFinder/R/removeGeneFrom.R geneSignatureFinder/R/findBest.R geneSignatureFinder/R/BICs.R geneSignatureFinder/R/seedsFinder.R geneSignatureFinder/R/normalApproximation.R geneSignatureFinder/R/signatureSummaryTable.R geneSignatureFinder/R/checkGeneForSeed.R geneSignatureFinder/R/importance.R geneSignatureFinder/R/classify.R geneSignatureFinder/R/BHcorrection.R geneSignatureFinder/R/NCPUS.R geneSignatureFinder/R/bbootstrap.R geneSignatureFinder/R/tValueFun.R
geneSignatureFinder/MD5
geneSignatureFinder/DESCRIPTION
geneSignatureFinder/man
geneSignatureFinder/man/removeGeneFrom.Rd geneSignatureFinder/man/searchResultsSummaryTable.Rd geneSignatureFinder/man/BHcorrection.Rd geneSignatureFinder/man/seedsFinder.Rd geneSignatureFinder/man/stNSCLC.Rd geneSignatureFinder/man/classify.Rd geneSignatureFinder/man/goodAndPoorClassification.Rd geneSignatureFinder/man/signatureSummaryTable.Rd geneSignatureFinder/man/signatureFinder.Rd geneSignatureFinder/man/testGE.Rd geneSignatureFinder/man/geNSCLC.Rd geneSignatureFinder/man/ensembleTable.Rd geneSignatureFinder/man/puttingAllTogether.Rd geneSignatureFinder/man/NCPUS.Rd geneSignatureFinder/man/importance.Rd geneSignatureFinder/man/BICs.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.