Man pages for geneSignatureFinder
A Gene-signatures finder tools
| BHcorrection | Benjamini & Hochberg (1995) method for p-values correction |
| BICs | Compute the bayesian information criteria |
| classify | Wrapper function to the classification method |
| ensembleTable | Build a data frame populated with statistical indexes for... |
| geNSCLC | Gene expression levels on 147 samples affected by Non Small... |
| goodAndPoorClassification | Function to classify the unsupervised clusters found through... |
| importance | Compute an index of importance of the genes in the signature. |
| NCPUS | Wrapper function to both makeCluster() and detecCore()... |
| puttingAllTogether | Example of strategy to find signature from different seeds at... |
| removeGeneFrom | Remove the gene with the lowest importance from a signature |
| searchResultsSummaryTable | Build a data frame populated with the results of a sequential... |
| seedsFinder | Evaluate some statistics on all genes in order to select... |
| signatureFinder | Main function to find the signature. |
| signatureSummaryTable | Build a data frame populated with the basic information of a... |
| stNSCLC | Survival times of 147 samples affected by Non Small Cell Lung... |
| testGE | Test the differential expression of the the genes in a... |
