clean_workdir: Removing files created by Genepop

In genepop: Population Genetic Data Analysis Using Genepop

Removing files created by Genepop

Description

This removes “temporary files” created by Genepop, but also output files, so it should be used only when one no longer needs the latter files. This function asumes that the input file name contains only alphanumeric, dot, or underscore characters.

Usage

clean_workdir(
  otherfiles = NULL,
  path = ".",
  suffixes = c("GRA", "ISO", "MIG", "PRI", "DAT", "DG", "DIV", "D", "DIS", "FST", "NUL",
    "RHO", "2G2", "G", "GE", "GE2", "INF", "MSD", "TAB", "ST2"),
  in. = TRUE,
  cmdline = TRUE
)

Arguments

otherfiles	Character vector(s): one or more names of files to be removed and not matched by the other arguments (such as the input file, or some output files not identified by their suffix, as shown in the Example).
path	character vector: path from where files should be removed.
suffixes	Character vector(s): suffixes of files to be removed (useful for output files with readily identifiable suffixes).
in.	boolean: whether to remove the fichier.in file created by Genepop.
cmdline	boolean: whether to remove the cmdline.txt file created by Genepop.

Examples

# Removing files possibly written by other examples in the documentation:
clean_workdir(otherfiles=c("sample.txt", "Dsample.txt", "w2.txt", 
"PEL1600withCoord.txt", "Rhesus.txt", "structest.txt"))

genepop documentation built on Jan. 22, 2023, 1:07 a.m.