genedivFis: Gene diversities and Fis (or rho_IS)
In genepop: Population Genetic Data Analysis Using Genepop

genedivFis

R Documentation

Gene diversities and Fis (or rho_IS)

Description

Evaluates Fis and gene diversities, or related measures based on allele sizes. See this section of the Genepop executable documentation for more information on the identity-based statistical methods, and this one for allele-size based ones.

Usage

genedivFis(
  inputFile,
  sizes = FALSE,
  outputFile = "",
  dataType = "Diploid",
  verbose = interactive()
)

Arguments

`inputFile`	The path of the input file, in Genepop format
`sizes`	logical: whether to compute statistics based on allele size, or not.
`outputFile`	character: The path of the output file
`dataType`	character: The haploid and diploid data
`verbose`	logical: whether to print some information

Value

The path of the output file is returned invisibly.

Examples

locinfile <- genepopExample('sample.txt')
genedivFis(locinfile,outputFile = 'sample.txt.DIV')
if ( ! interactive()) clean_workdir(otherfiles='sample.txt')

genepop documentation built on Jan. 22, 2023, 1:07 a.m.