GC_align: Align gene clusters
In geneviewer: Gene Cluster Visualizations

GC_align

R Documentation

Align gene clusters

Description

This function aligns clusters based on a specified gene id.

Usage

GC_align(GC_chart, id_column, id, align = "left")

Arguments

`GC_chart`	A chart object containing genomic data along with clustering information.
`id_column`	The name of the column that contains the gene identifiers.
`id`	The specific identifier of the gene to be aligned.
`align`	The alignment method for the gene. Valid values are "left", "right", or "center". Defaults to "left".

Value

The modified 'GC_chart' object with updated genomic coordinates.

Examples

genes_data <- data.frame(
  start = c(10, 90, 130, 170, 210),
  end = c(40, 120, 160, 200, 240),
  name = c('Gene 1', 'Gene 2', 'Gene 3', 'Gene 4', 'Gene 5'),
  group = c('A', 'B', 'C', 'C', 'A'),
  cluster =  c(1, 1, 1, 2, 2)
)


GC_chart(genes_data, group = "group", cluster = "cluster", height = "150px") %>%
  GC_align("group", "A", align = "left") %>%
  GC_legend(FALSE)

geneviewer documentation built on April 12, 2025, 9:12 a.m.