ophA_clusters: ophA Gene Cluster from Omphalotus olearius

In geneviewer: Gene Cluster Visualizations

ophA Gene Cluster from Omphalotus olearius

Description

This dataset represents the ophA gene cluster from Omphalotus olearius and Dendrothele bispora, involved in the production of omphalotin, a cyclic N-methylated peptide.

Usage

ophA_clusters

Format

A data frame with 17 rows and 5 columns:

name

Gene names. A character vector.

start

Start positions of the genes. An integer vector.

end

End positions of the genes. An integer vector.

class

Classifications of the genes. A character vector indicating the type of protein or function associated with each gene.

cluster

Cluster identification as a character vector, specifying whether the gene belongs to the ophA or dbophA gene cluster.

References

van der Velden NS et al. Autocatalytic backbone N-methylation in a family of ribosomal peptide natural products. Nat Chem Biol. 2017 Aug;13(8):833-835. doi: 10.1038/nchembio.2393. Epub 2017 Jun 5. PMID: 28581484.

geneviewer documentation built on April 12, 2025, 9:12 a.m.