gglogo: Geom for Logo Sequence Plots

Visualize sequences in (modified) logo plots. The design choices used by these logo plots allow sequencing data to be more easily analyzed. Because it is integrated into the 'ggplot2' geom framework, these logo plots support native features such as faceting.

AuthorHeike Hofmann [aut], Eric Hare [aut, cre], GGobi Foundation [aut]
Date of publication2017-02-17 23:36:57
MaintainerEric Hare <erichare@iastate.edu>
LicenseGPL-3
Version0.1.3
https://github.com/heike/gglogo

View on CRAN

Functions

aacids Man page
alphabet Man page
alphabet_braille Man page
alphabet_comic Man page
alphabet_xkcd Man page
calcInformation Man page
createPolygons Man page
determineOrder Man page
fortify Man page
fortify.default Man page
geom_logo Man page
GeomLogo Man page
getOutline Man page
ggfortify Man page
identifyParts Man page
letterObject Man page
letterToPolygon Man page
logo Man page
mainPlusIslands Man page
point_line_dist Man page
position_classic Man page
PositionClassic Man page
position_logo Man page
PositionLogo Man page
sequences Man page
simplifyPolygon Man page
simplify_rec Man page
splitSequence Man page
stat_logo Man page
StatLogo Man page

Files

gglogo
gglogo/inst
gglogo/inst/cluster.r
gglogo/inst/doc
gglogo/inst/doc/gglogo-alphabet.R
gglogo/inst/doc/gglogo-alphabet.Rmd
gglogo/inst/doc/gglogo-alphabet.html
gglogo/NAMESPACE
gglogo/NEWS.md
gglogo/data
gglogo/data/aacids.RData
gglogo/data/alphabet_braille.rda
gglogo/data/alphabet_comic.rda
gglogo/data/aacids.rda
gglogo/data/alphabet.rda
gglogo/data/sequences.rda
gglogo/data/alphabet_xkcd.rda
gglogo/R
gglogo/R/text.r
gglogo/R/alphabet.r
gglogo/R/thin.r
gglogo/R/logos.r
gglogo/R/data.r
gglogo/R/position.r
gglogo/vignettes
gglogo/vignettes/gglogo-alphabet.Rmd
gglogo/MD5
gglogo/build
gglogo/build/vignette.rds
gglogo/DESCRIPTION
gglogo/man
gglogo/man/fortify.Rd gglogo/man/position_logo.Rd gglogo/man/letterToPolygon.Rd gglogo/man/mainPlusIslands.Rd gglogo/man/logo.Rd gglogo/man/splitSequence.Rd gglogo/man/createPolygons.Rd gglogo/man/stat_logo.Rd gglogo/man/simplify_rec.Rd gglogo/man/sequences.Rd gglogo/man/aacids.Rd gglogo/man/simplifyPolygon.Rd gglogo/man/ggfortify.Rd gglogo/man/point_line_dist.Rd gglogo/man/letterObject.Rd gglogo/man/determineOrder.Rd gglogo/man/alphabet.Rd gglogo/man/identifyParts.Rd gglogo/man/calcInformation.Rd gglogo/man/getOutline.Rd gglogo/man/geom_logo.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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