gglogo: Geom for Logo Sequence Plots

Visualize sequences in (modified) logo plots. The design choices used by these logo plots allow sequencing data to be more easily analyzed. Because it is integrated into the 'ggplot2' geom framework, these logo plots support native features such as faceting.

AuthorHeike Hofmann [aut], Eric Hare [aut, cre], GGobi Foundation [aut]
Date of publication2016-06-29 02:44:46
MaintainerEric Hare <erichare@iastate.edu>
LicenseGPL-3
Version0.1.2
https://github.com/heike/gglogo

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Files in this package

gglogo
gglogo/inst
gglogo/inst/cluster.r
gglogo/inst/visual_test
gglogo/inst/visual_test/vtest
gglogo/inst/visual_test/vtest/images
gglogo/inst/visual_test/vtest/images/d93cc0a152e33496651c840f13bbcd8e
gglogo/inst/visual_test/vtest/images/97a8db6e1b341d10f3619e012110beb0
gglogo/inst/visual_test/vtest/images/e8ee76302992cdf08c555066fc33472c
gglogo/inst/visual_test/vtest/images/6d176252c1f71753984e9b31bb16375a
gglogo/inst/visual_test/vtest/resultsets.csv
gglogo/inst/visual_test/vtest/commits.csv
gglogo/inst/visual_test/logos.R
gglogo/NAMESPACE
gglogo/data
gglogo/data/aacids.RData
gglogo/data/aacids.rda
gglogo/data/alphabet.rda
gglogo/data/sequences.rda
gglogo/R
gglogo/R/text.r
gglogo/R/alphabet.r
gglogo/R/thin.r
gglogo/R/logos.r
gglogo/R/data.r
gglogo/R/position.r
gglogo/MD5
gglogo/DESCRIPTION
gglogo/man
gglogo/man/fortify.Rd gglogo/man/position_logo.Rd gglogo/man/letterToPolygon.Rd gglogo/man/mainPlusIslands.Rd gglogo/man/logo.Rd gglogo/man/splitSequence.Rd gglogo/man/createPolygons.Rd gglogo/man/stat_logo.Rd gglogo/man/simplify_rec.Rd gglogo/man/sequences.Rd gglogo/man/aacids.Rd gglogo/man/simplifyPolygon.Rd gglogo/man/ggfortify.Rd gglogo/man/point_line_dist.Rd gglogo/man/letterObject.Rd gglogo/man/determineOrder.Rd gglogo/man/alphabet.Rd gglogo/man/identifyParts.Rd gglogo/man/calcInformation.Rd gglogo/man/getOutline.Rd gglogo/man/geom_logo.Rd

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