logo: Logo plot

In gglogo: Geom for Logo Sequence Plots

Description

Simple logo plot of sequences. For more complicated sequence logos, such as with treatment comparisons or subsets see geom_logo.

Usage

logo(sequences)

Arguments

sequences

vector of text sequences, for which consensus logo is to be shown

Value

ggplot2 object for simple sequence

Examples

data(sequences)
library(ggplot2)
library(RColorBrewer)
cols <- rep(brewer.pal(12, name="Paired"),22)
logo(sequences$peptide) + aes(fill=element) + scale_fill_manual(values=cols)

Example output

Attaching package: 'ggplot2'

The following object is masked from 'package:gglogo':

    fortify

gglogo documentation built on Jan. 29, 2020, 1:09 a.m.