ggm: Functions for graphical Markov models
Version 2.3

Functions and datasets for maximum likelihood fitting of some classes of graphical Markov models.

AuthorGiovanni M. Marchetti, Mathias Drton, Kayvan Sadeghi
Date of publication2015-01-21 12:47:19
MaintainerGiovanni M. Marchetti <giovanni.marchetti@disia.unifi.it>
LicenseGPL (>= 2)
Version2.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ggm")

Popular man pages

AG: Ancestral graph
ggm: The package 'ggm': summary information
grMAT: Graph to adjacency matrix
parcor: Partial correlations
pcor: Partial correlation
UG: Defining an undirected graph (UG)
unmakeMG: Loopless mixed graphs components
See all...

All man pages Function index File listing

Man pages

adjMatrix: Adjacency matrix of a graph
AG: Ancestral graph
allEdges: All edges of a graph
anger: Anger data
basiSet: Basis set of a DAG
bfsearch: Breadth first search
binve: Inverts a marginal log-linear parametrization
blkdiag: Block diagonal matrix
blodiag: Block diagonal matrix
checkIdent: Identifiability of a model with one latent variable
cmpGraph: The complementary graph
conComp: Connectivity components
correlations: Marginal and partial correlations
cycleMatrix: Fundamental cycles
DAG: Directed acyclic graphs (DAGs)
derived: Data on blood pressure body mass and age
DG: Directed graphs
diagv: Matrix product with a diagonal matrix
drawGraph: Drawing a graph with a simple point and click interface.
dSep: d-separation
edgematrix: Edge matrix of a graph
essentialGraph: Essential graph
findPath: Finding paths
fitAncestralGraph: Fitting of Gaussian Ancestral Graph Models
fitConGraph: Fitting a Gaussian concentration graph model
fitCovGraph: Fitting of Gaussian covariance graph models
fitDag: Fitting of Gaussian DAG models
fitDagLatent: Fitting Gaussian DAG models with one latent variable
fitmlogit: Multivariate logistic models
fundCycles: Fundamental cycles
ggm: The package 'ggm': summary information
glucose: Glucose control
grMAT: Graph to adjacency matrix
icf: Iterative conditional fitting
In: Indicator matrix
InducedGraphs: Graphs induced by marginalization or conditioning
isAcyclic: Graph queries
isADMG: Acyclic directed mixed graphs
isAG: Ancestral graph
isGident: G-identifiability of an UG
MAG: Maximal ancestral graph
makeMG: Mixed Graphs
marg.param: Link function of marginal log-linear parameterization
MarkEqMag: Markov equivalence of maximal ancestral graphs
MarkEqRcg: Markov equivalence for regression chain graphs.
marks: Mathematics marks
mat.mlogit: Multivariate logistic parametrization
Max: Maximisation for graphs
MRG: Maximal ribbonless graph
msep: The m-separation criterion
MSG: Maximal summary graph
null: Null space of a matrix
parcor: Partial correlations
pcor: Partial correlation
pcor.test: Test for zero partial association
plotGraph: Plot of a mixed graph
powerset: Power set
rcorr: Random correlation matrix
RepMarBG: Representational Markov equivalence to bidirected graphs.
RepMarDAG: Representational Markov equivalence to directed acyclic...
RepMarUG: Representational Markov equivalence to undirected graphs.
RG: Ribbonless graph
rnormDag: Random sample from a decomposable Gaussian model
rsphere: Random vectors on a sphere
SG: summary graph
shipley.test: Test of all independencies implied by a given DAG
SimpleGraphOperations: Simple graph operations
stress: Stress
surdata: A simulated data set
swp: Sweep operator
topSort: Topological sort
transClos: Transitive closure of a graph
triDec: Triangular decomposition of a covariance matrix
UG: Defining an undirected graph (UG)
unmakeMG: Loopless mixed graphs components
UtilityFunctions: Utility functions

Functions

AG Man page
DAG Man page
DG Man page
In Man page
InducedGraphs Man page
MAG Man page
MRG Man page
MSG Man page
MarkEqMag Man page Source code
MarkEqRcg Man page Source code
Max Man page Source code
RG Man page
RR Man page Source code
RepMarBG Man page Source code
RepMarDAG Man page Source code
RepMarUG Man page Source code
SG Man page
SPl Man page
UG Man page
adjMatrix Man page
allEdges Man page
anger Man page
basiSet Man page
bd Man page
bfsearch Man page
binve Man page
blkdiag Man page
blodiag Man page
ch Man page
checkIdent Man page
cmpGraph Man page
conComp Man page
correlations Man page
cycleMatrix Man page
dSep Man page
derived Man page
diagv Man page
drawGraph Man page
edgematrix Man page
essentialGraph Man page
findPath Man page
fitAncestralGraph Man page
fitConGraph Man page
fitCovGraph Man page
fitDag Man page
fitDagLatent Man page
fitmlogit Man page
fundCycles Man page
ggm Man page
glucose Man page
grMAT Man page
icf Man page
icfmag Man page
inducedChainGraph Man page
inducedConGraph Man page
inducedCovGraph Man page
inducedDAG Man page
inducedRegGraph Man page
isADMG Man page
isAG Man page
isAcyclic Man page
isGident Man page
likGau Man page
makeMG Man page
marg.param Man page
marks Man page
mat.mlogit Man page
msep Man page Source code
null Man page
pa Man page
parcor Man page
pcor Man page
pcor.test Man page
plotGraph Man page
powerset Man page
rcorr Man page
rem Man page Source code
rnormDag Man page
rsphere Man page
shipley.test Man page
stress Man page
surdata Man page
swp Man page
topOrder Man page
topSort Man page
transClos Man page
triDec Man page
unmakeMG Man page

Files

inst
inst/doc
inst/doc/mixed-graphs.pdf
NAMESPACE
NEWS
data
data/stress.rda
data/surdata.rda
data/glucose.rda
data/derived.rda
data/marks.rda
data/anger.rda
R
R/kayvan.R
R/functions.R
vignettes
vignettes/mixed-graphs.pdf
MD5
DESCRIPTION
man
man/powerset.Rd
man/stress.Rd
man/findPath.Rd
man/fitDag.Rd
man/derived.Rd
man/shipley.test.Rd
man/UtilityFunctions.Rd
man/MRG.Rd
man/Max.Rd
man/conComp.Rd
man/basiSet.Rd
man/fitDagLatent.Rd
man/blkdiag.Rd
man/icf.Rd
man/ggm.Rd
man/null.Rd
man/checkIdent.Rd
man/surdata.Rd
man/cycleMatrix.Rd
man/unmakeMG.Rd
man/isAcyclic.Rd
man/DG.Rd
man/adjMatrix.Rd
man/marg.param.Rd
man/mat.mlogit.Rd
man/MarkEqRcg.Rd
man/triDec.Rd
man/isGident.Rd
man/UG.Rd
man/dSep.Rd
man/DAG.Rd
man/pcor.Rd
man/fitCovGraph.Rd
man/RepMarBG.Rd
man/swp.Rd
man/drawGraph.Rd
man/isAG.Rd
man/makeMG.Rd
man/plotGraph.Rd
man/AG.Rd
man/MSG.Rd
man/anger.Rd
man/fitAncestralGraph.Rd
man/marks.Rd
man/glucose.Rd
man/blodiag.Rd
man/correlations.Rd
man/rcorr.Rd
man/fitConGraph.Rd
man/msep.Rd
man/essentialGraph.Rd
man/transClos.Rd
man/MAG.Rd
man/parcor.Rd
man/diagv.Rd
man/MarkEqMag.Rd
man/fitmlogit.Rd
man/In.Rd
man/RG.Rd
man/RepMarDAG.Rd
man/edgematrix.Rd
man/SG.Rd
man/topSort.Rd
man/grMAT.Rd
man/isADMG.Rd
man/rnormDag.Rd
man/SimpleGraphOperations.Rd
man/bfsearch.Rd
man/cmpGraph.Rd
man/InducedGraphs.Rd
man/pcor.test.Rd
man/RepMarUG.Rd
man/binve.Rd
man/allEdges.Rd
man/fundCycles.Rd
man/rsphere.Rd
ggm documentation built on May 19, 2017, 7:21 a.m.

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