isAcyclic: Graph queries

In ggm: Graphical Markov Models with Mixed Graphs

Graph queries

Description

Checks if a given graph is acyclic.

Usage

isAcyclic(amat, method = 2)

Arguments

amat	a square Boolean matrix with dimnames, the adjacency matrix of a graph.
method	an integer 1 or 2 specifying the method used. If method=1 the function calls the function clusters in package igraph to find the strong components: two nodes v and w are in the same strong component iff there are directed paths from v to w and from w to v. If method=2 the function uses the ggm function transClos. Method 1 is faster.

Value

a logical value, TRUE if the graph is acyclic and FALSE otherwise.

Author(s)

David Edwards, Giovanni M. Marchetti

References

Aho, A.V., Hopcroft, J.E. & Ullman, J.D. (1983). Data structures and algorithms. Reading: Addison-Wesley.

Examples

## A cyclic graph
d <- matrix(0,3,3)
rownames(d) <- colnames(d) <- c("x", "y", "z")
d["x","y"] <- d["y", "z"] <- d["z", "x"] <- 1
## Test if the graph is acyclic
isAcyclic(d)
isAcyclic(d, method = 1)

ggm documentation built on May 29, 2024, 7:27 a.m.