API for ggpicrust2
Make 'PICRUSt2' Output Analysis and Visualization Easier
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| annotate_pathways | Source code |
| calculate_abundance_stats | Man page Source code |
| calculate_rank_metric | Man page Source code |
| calculate_smart_text_size | Man page Source code |
| color_themes | Man page |
| compare_daa_results | Man page Source code |
| compare_gsea_daa | Man page Source code |
| compare_metagenome_results | Man page Source code |
| create_basic_go_mapping | Man page Source code |
| create_dendrogram | Man page Source code |
| create_empty_plot | Man page Source code |
| create_gradient_colors | Man page Source code |
| create_heatmap_plot | Man page Source code |
| create_legend_theme | Man page Source code |
| create_network_plot | Man page Source code |
| create_pathway_class_theme | Man page Source code |
| create_progress_bar | Source code |
| daa_annotated_results_df | Man page |
| daa_results_df | Man page |
| format_pvalue_smart | Man page Source code |
| generate_nested_colors | Man page Source code |
| get_available_themes | Man page Source code |
| get_color_theme | Man page Source code |
| get_kegg_with_cache | Source code |
| get_significance_colors | Man page Source code |
| get_significance_stars | Man page Source code |
| ggpicrust2 | Man page Source code |
| ggpicrust2_extended | Man page Source code |
| gsea_pathway_annotation | Man page Source code |
| import_MicrobiomeAnalyst_daa_results | Man page Source code |
| kegg_abundance | Man page |
| ko2kegg_abundance | Man page |
| ko_abundance | Man page |
| legend_annotation_utils | Man page |
| load_reference_data | Source code |
| log_message | Source code |
| metacyc_abundance | Man page |
| metadata | Man page |
| pathway_annotation | Man page Source code |
| pathway_daa | Man page Source code |
| pathway_errorbar | Man page Source code |
| pathway_errorbar_table | Man page Source code |
| pathway_gsea | Man page Source code |
| pathway_heatmap | Man page Source code |
| pathway_pca | Man page Source code |
| perform_aldex2_analysis | Source code |
| perform_deseq2_analysis | Source code |
| perform_edger_analysis | Source code |
| perform_lefser_analysis | Source code |
| perform_limma_voom_analysis | Source code |
| perform_linda_analysis | Source code |
| perform_maaslin2_analysis | Source code |
| perform_metagenomeseq_analysis | Source code |
| prepare_gene_sets | Man page Source code |
| preview_color_theme | Man page Source code |
| process_kegg_annotations | Source code |
| read_abundance_file | Source code |
| resolve_annotation_overlaps | Man page Source code |
| run_fgsea | Man page Source code |
| safe_extract | Man page Source code |
| smart_color_selection | Man page Source code |
| validate_abundance_data | Man page Source code |
| validate_group_sizes | Man page Source code |
| validate_inputs | Source code |
| visualize_gsea | Man page Source code |
| with_retry | Source code |
