prepare_gene_sets: Prepare gene sets for GSEA
In ggpicrust2: Make 'PICRUSt2' Output Analysis and Visualization Easier
prepare_gene_sets R Documentation
Prepare gene sets for GSEA
Description
Prepare gene sets for GSEA
Usage
prepare_gene_sets(pathway_type = "KEGG", organism = "ko", go_category = "BP")
Arguments
pathway_type
A character string specifying the pathway type: "KEGG", "MetaCyc", or "GO"
organism
A character string specifying the organism (only relevant for KEGG and GO)
go_category
A character string specifying the GO category: "BP" (Biological Process), "MF" (Molecular Function), "CC" (Cellular Component), or "all"
Value
A list of pathway gene sets
ggpicrust2 documentation built on Aug. 26, 2025, 1:07 a.m.
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| prepare_gene_sets | R Documentation |
Prepare gene sets for GSEA
Description
Prepare gene sets for GSEA
Usage
prepare_gene_sets(pathway_type = "KEGG", organism = "ko", go_category = "BP")
Arguments
pathway_type |
A character string specifying the pathway type: "KEGG", "MetaCyc", or "GO" |
organism |
A character string specifying the organism (only relevant for KEGG and GO) |
go_category |
A character string specifying the GO category: "BP" (Biological Process), "MF" (Molecular Function), "CC" (Cellular Component), or "all" |
Value
A list of pathway gene sets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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