prepare_gene_sets: Prepare gene sets for GSEA
In ggpicrust2: Make 'PICRUSt2' Output Analysis and Visualization Easier
prepare_gene_sets R Documentation
Prepare gene sets for GSEA
Description
Prepare gene sets for GSEA
Usage
prepare_gene_sets(pathway_type = "KEGG", organism = "ko")
Arguments
pathway_type
A character string specifying the pathway type: "KEGG", "MetaCyc", or "GO"
organism
A character string specifying the organism (only relevant for KEGG and GO)
Value
A list of pathway gene sets
ggpicrust2 documentation built on April 13, 2025, 9:08 a.m.
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| prepare_gene_sets | R Documentation |
Prepare gene sets for GSEA
Description
Prepare gene sets for GSEA
Usage
prepare_gene_sets(pathway_type = "KEGG", organism = "ko")
Arguments
pathway_type |
A character string specifying the pathway type: "KEGG", "MetaCyc", or "GO" |
organism |
A character string specifying the organism (only relevant for KEGG and GO) |
Value
A list of pathway gene sets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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