run_fgsea: Run fgsea using the recommended fgseaMultilevel method

In ggpicrust2: Make 'PICRUSt2' Output Analysis and Visualization Easier

Run fgsea using the recommended fgseaMultilevel method

Description

Run fgsea using the recommended fgseaMultilevel method

Usage

run_fgsea(
  ranked_list,
  gene_sets,
  min_size = 5,
  max_size = 500,
  p_adjust_method = "BH"
)

Arguments

ranked_list	A named vector of ranking statistics. Names define the feature universe and must be non-empty and unique; values must be finite and contain at least two distinct statistics.
gene_sets	A list of pathway gene sets
min_size	An integer specifying the minimum gene set size
max_size	An integer specifying the maximum gene set size
p_adjust_method	P-value adjustment method applied to fgsea raw p-values.

Value

A data frame of fgsea results

ggpicrust2 documentation built on Oct. 7, 2026, 1:07 a.m.