Man pages for ggpicrust2
Make 'PICRUSt2' Output Analysis and Visualization Easier

calculate_rank_metricCalculate rank metric for GSEA
compare_daa_resultsCompare the Consistency of Statistically Significant Features
compare_gsea_daaCompare GSEA and DAA results
compare_metagenome_resultsCompare Metagenome Results
create_heatmap_plotCreate heatmap visualization of GSEA results
create_network_plotCreate network visualization of GSEA results
daa_annotated_results_dfDifferentially Abundant Analysis Results with Annotation
daa_results_dfDAA Results Dataset
ggpicrust2This function integrates pathway name/description...
ggpicrust2_extendedIntegrated analysis with ggpicrust2 including GSEA
gsea_pathway_annotationAnnotate GSEA results with pathway information
import_MicrobiomeAnalyst_daa_resultsImport Differential Abundance Analysis (DAA) results from...
kegg_abundanceKEGG Abundance Dataset
ko2kegg_abundanceConvert KO abundance in picrust2 export files to KEGG pathway...
ko_abundanceKO Abundance Dataset
metacyc_abundanceMetaCyc Abundance Dataset
metadataMetadata for ggpicrust2 Demonstration
pathway_annotationPathway information annotation of "EC", "KO", "MetaCyc"...
pathway_daaDifferential Abundance Analysis for Predicted Functional...
pathway_errorbarThe function pathway_errorbar() is used to visualize the...
pathway_gseaGene Set Enrichment Analysis for PICRUSt2 output
pathway_heatmapCreate pathway heatmap
pathway_pcaPerform Principal Component Analysis (PCA) on functional...
prepare_gene_setsPrepare gene sets for GSEA
run_fgseaRun fast GSEA implementation
safe_extractSafely Extract Elements from a List
visualize_gseaVisualize GSEA results
ggpicrust2 documentation built on April 13, 2025, 9:08 a.m.