Man pages for ggpicrust2
Make 'PICRUSt2' Output Analysis and Visualization Easier

calculate_rank_metricCalculate rank metric for GSEA
calculate_smart_text_sizeSmart Text Size Calculator
color_themesColor Theme System for ggpicrust2
compare_daa_resultsCompare the Consistency of Statistically Significant Features
compare_gsea_daaCompare GSEA and DAA results
compare_metagenome_resultsCompare Metagenome Results
create_basic_go_mappingCreate basic GO mapping for microbiome analysis
create_dendrogramCreate dendrogram plot from hierarchical clustering
create_empty_plotCreate empty plot for edge cases
create_gradient_colorsCreate Gradient Colors
create_heatmap_plotCreate heatmap visualization of GSEA results
create_legend_themeCreate Enhanced Legend Theme
create_network_plotCreate network visualization of GSEA results
create_pathway_class_themeCreate Pathway Class Annotation Theme
daa_annotated_results_dfDifferentially Abundant Analysis Results with Annotation
daa_results_dfDAA Results Dataset
format_pvalue_smartSmart P-value Formatting
generate_nested_colorsGenerate colors for nested grouping variables
get_available_themesGet Available Color Themes
get_color_themeGet Color Theme
get_significance_colorsGet Significance Colors
get_significance_starsGet Significance Stars
ggpicrust2This function integrates pathway name/description...
ggpicrust2_extendedIntegrated analysis with ggpicrust2 including GSEA
gsea_pathway_annotationAnnotate GSEA results with pathway information
import_MicrobiomeAnalyst_daa_resultsImport Differential Abundance Analysis (DAA) results from...
kegg_abundanceKEGG Abundance Dataset
ko2kegg_abundanceConvert KO abundance in picrust2 export files to KEGG pathway...
ko_abundanceKO Abundance Dataset
legend_annotation_utilsLegend and Annotation Utilities for ggpicrust2
metacyc_abundanceMetaCyc Abundance Dataset
metadataMetadata for ggpicrust2 Demonstration
pathway_annotationPathway information annotation
pathway_daaDifferential Abundance Analysis for Predicted Functional...
pathway_errorbarThe function pathway_errorbar() is used to visualize the...
pathway_errorbar_tableGenerate Abundance Statistics Table for Pathway Analysis
pathway_gseaGene Set Enrichment Analysis for PICRUSt2 output
pathway_heatmapCreate pathway heatmap with support for multiple grouping...
pathway_pcaPerform Principal Component Analysis (PCA) on functional...
prepare_gene_setsPrepare gene sets for GSEA
preview_color_themePreview Color Theme
resolve_annotation_overlapsDetect and Resolve Annotation Overlaps
run_fgseaRun fast GSEA implementation
safe_extractSafely Extract Elements from a List
smart_color_selectionSmart Color Selection
validate_abundance_dataValidate abundance data for PICRUSt compatibility
validate_group_sizesValidate group sizes for statistical analysis
visualize_gseaVisualize GSEA results
ggpicrust2 documentation built on Aug. 26, 2025, 1:07 a.m.