ggpubr: 'ggplot2' Based Publication Ready Plots
Version 0.1.2

'ggplot2' is an excellent and flexible package for elegant data visualization in R. However the default generated plots requires some formatting before we can send them for publication. Furthermore, to customize a 'ggplot', the syntax is opaque and this raises the level of difficulty for researchers with no advanced R programming skills. 'ggpubr' provides some easy-to-use functions for creating and customizing 'ggplot2'- based publication ready plots.

Browse man pages Browse package API and functions Browse package files

AuthorAlboukadel Kassambara [aut, cre]
Date of publication2017-03-14 10:26:21
MaintainerAlboukadel Kassambara <alboukadel.kassambara@gmail.com>
LicenseGPL-2
Version0.1.2
URL http://www.sthda.com/english/rpkgs/ggpubr
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ggpubr")

Man pages

desc_statby: Descriptive statistics by groups
diff_express: Differential gene expression analysis results
geom_exec: Execute ggplot2 functions
get_palette: Generate Color Palettes
ggbarplot: Bar plot
ggboxplot: Box plot
ggdensity: Density plot
ggdotchart: Cleveland's Dot Plots
ggdotplot: Dot plot
ggecdf: Empirical cumulative density function
ggerrorplot: Visualizing Error
gghistogram: Histogram plot
ggline: Line plot
ggmaplot: MA-plot from means and log fold changes
ggpar: Graphical parameters
ggpie: Pie chart
ggqqplot: QQ Plots
ggscatter: Scatter plot
ggstripchart: Stripcharts
ggtext: Text
ggviolin: Violin plot
show_line_types: Line types available in R
show_point_shapes: Point shapes available in R
stat_chull: Plot convex hull of a set of points
stat_conf_ellipse: Plot confidence ellipses.
stat_mean: Draw group mean points
theme_pubr: Publication ready theme

Functions

add Source code
add_stars Source code
barplot_params Source code
boxplot_params Source code
brewerpal Source code
check_add.params Source code
check_data Source code
confidence_ellipse Source code
convex_ellipse Source code
coord_ellipse Source code
desc_statby Man page Source code
diff_express Man page
dotplot_params Source code
geom_exec Man page Source code Source code
get_brewer_pal Source code
get_ggplot_ncolors Source code
get_ggsci_pal Source code
get_not_numeric_vars Source code
get_pal Source code
get_palette Man page Source code
ggannotate Source code
ggbarplot Man page Source code
ggboxplot Man page Source code
ggcolor Source code
ggdensity Man page Source code
ggdotchart Man page Source code
ggdotplot Man page Source code
ggecdf Man page Source code
ggerrorplot Man page Source code
ggfill Source code
gghistogram Man page Source code
ggline Man page Source code
ggmaplot Man page Source code
ggpar Man page Source code
ggpie Man page Source code
ggqqplot Man page Source code
ggscatter Man page Source code
ggscipal Source code
ggstripchart Man page Source code
ggtext Man page Source code
ggviolin Man page Source code
gradient_col Source code
hist_params Source code
labs Source code
labs_pubr Man page Source code
mean_sd Source code
parse_font Source code
qq_line Source code
s_col_palette Source code
scale_color_ggsci Source code
scale_fill_ggsci Source code
scale_point_shape Source code
set_axis_limits Source code
set_legend Source code
set_orientation Source code
set_scale Source code
set_ticks Source code
set_ticksby Source code
show_line_types Man page Source code
show_point_shapes Man page Source code
standard_params Source code
stat_chull Man page Source code
stat_conf_ellipse Man page Source code
stat_ellipse Source code
stat_mean Man page Source code
stat_qq_confint Source code
stat_qqline Source code
theme_classic2 Man page Source code
theme_horizontal Source code
theme_pubr Man page Source code
theme_vertical Source code
violin_params Source code

Files

NAMESPACE
NEWS.md
data
data/diff_express.rda
R
R/stat_conf_ellipse.R
R/show_line_types.R
R/ggstripchart.R
R/get_palette.R
R/ggviolin.R
R/ggtext.R
R/ggpar.R
R/ggboxplot.R
R/gghistogram.R
R/ggbarplot.R
R/ggdotchart.R
R/show_point_shapes.R
R/theme_pubr.R
R/ggmaplot.R
R/utilities.R
R/ggerrorplot.R
R/ggdensity.R
R/ggline.R
R/diff_express.R
R/desc_statby.R
R/ggscatter.R
R/ggecdf.R
R/ggqqplot.R
R/geom_exec.R
R/ggpie.R
R/stat_chull.R
R/stat_mean.R
R/ggdotplot.R
README.md
MD5
DESCRIPTION
man
man/ggdotchart.Rd
man/ggbarplot.Rd
man/ggstripchart.Rd
man/ggpar.Rd
man/stat_conf_ellipse.Rd
man/geom_exec.Rd
man/desc_statby.Rd
man/get_palette.Rd
man/stat_chull.Rd
man/ggdotplot.Rd
man/ggqqplot.Rd
man/ggviolin.Rd
man/ggerrorplot.Rd
man/gghistogram.Rd
man/ggline.Rd
man/theme_pubr.Rd
man/ggtext.Rd
man/ggpie.Rd
man/stat_mean.Rd
man/ggecdf.Rd
man/ggboxplot.Rd
man/show_point_shapes.Rd
man/ggmaplot.Rd
man/diff_express.Rd
man/ggscatter.Rd
man/ggdensity.Rd
man/show_line_types.Rd
tools
tools/README-ggpubr-1.png
tools/README-ggpubr-2.png
tools/README-ggpubr-box-plot-dot-plots-strip-charts-2.png
tools/README-ggpubr-box-plot-dot-plots-strip-charts-1.png
ggpubr documentation built on May 20, 2017, 4:20 a.m.