gene_expression | R Documentation |
Gene expression data extracted from TCGA using the 'RTCGA' and 'RTCGA.mRNA' R packages. It contains the mRNA expression for 3 genes - GATA3, PTEN and XBP1- from 3 different datasets: Breast invasive carcinoma (BRCA), Ovarian serous cystadenocarcinoma (OV) and Lung squamous cell carcinoma (LUSC)
data("gene_expression")
A data frame with 1305 rows and 5 columns.
bcr_patient_barcode
sample ID
dataset
cance type
GATA3
GATA3 gene expression
PTEN
PTEN gene expression
XBP1
XBP1 gene expression.
data(gene_expression) ggboxplot(gene_expression, x = "dataset", y = c("GATA3", "PTEN", "XBP1"), combine = TRUE, ylab = "Expression", color = "dataset", palette = "jco")
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