rgb_gsea: The GSEA GenePattern Color Palettes

In ggsci: Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

The GSEA GenePattern Color Palettes

Description

Color palette inspired by the colors used in the heatmaps plotted by GSEA GenePattern.

Usage

rgb_gsea(palette = c("default"), n = 12, alpha = 1, reverse = FALSE)

Arguments

palette	Palette type. Currently there is one available option: "default" (continuous palette with 12 base colors).
n	Number of individual colors to be generated.
alpha	Transparency level, a real number in (0, 1]. See alpha in rgb for details.
reverse	Logical. Should the order of the colors be reversed?

Note

The 12 base colors used in this palette are derived from the HeatMapImage documentation.

Author(s)

Nan Xiao <[e-mail]> | <https://nanx.me>

Examples

library("scales")
show_col(pal_gsea("default")(12))
show_col(pal_gsea("default", n = 30, alpha = 0.6, reverse = TRUE)(30))

ggsci documentation built on March 31, 2023, 5:16 p.m.