rgb_gsea: The GSEA GenePattern color palettes

In ggsci: Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

The GSEA GenePattern color palettes

Description

Color palette inspired by the colors used in the heatmaps plotted by GSEA GenePattern.

Usage

rgb_gsea(palette = c("default"), n = 12, alpha = 1, reverse = FALSE)

Arguments

palette	Palette type. Currently there is one available option: "default" (continuous palette with 12 base colors).
n	Number of individual colors to be generated.
alpha	Transparency level, a real number in (0, 1]. See alpha in grDevices::rgb() for details.
reverse	Logical. Should the order of the colors be reversed?

Note

The 12 base colors used in this palette are derived from the HeatMapImage documentation.

Author(s)

Nan Xiao | [e-mail] | https://nanx.me

Examples

library("scales")
show_col(pal_gsea("default")(12))
show_col(pal_gsea("default", n = 30, alpha = 0.6, reverse = TRUE)(30))

ggsci documentation built on June 22, 2024, 10:29 a.m.