scale_gsea: The GSEA GenePattern Color Scales

In ggsci: Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'

The GSEA GenePattern Color Scales

Description

See pal_gsea for details.

Usage

scale_color_gsea(palette = c("default"), alpha = 1, reverse = FALSE, ...)

scale_colour_gsea(palette = c("default"), alpha = 1, reverse = FALSE, ...)

scale_fill_gsea(palette = c("default"), alpha = 1, reverse = FALSE, ...)

Arguments

palette	Palette type. Currently there is one available option: "default" (continuous palette with 12 base colors).
alpha	Transparency level, a real number in (0, 1]. See alpha in rgb for details.
reverse	Logical. Should the order of the colors be reversed?
...	additional parameters for discrete_scale

Author(s)

Nan Xiao <[e-mail]> | <https://nanx.me>

Examples

library("ggplot2")
library("reshape2")
data("mtcars")

cor <- cor(mtcars)
cor_melt <- melt(cor)

ggplot(
  cor_melt,
  aes(x = Var1, y = Var2, fill = value)
) +
  geom_tile(colour = "black", size = 0.3) +
  theme_bw() + scale_fill_gsea()

ggsci documentation built on March 31, 2023, 5:16 p.m.