ggspectra: Extensions to 'ggplot2' for Radiation Spectra
Version 0.2.1

Additional annotations, and statsfor plotting "light" spectra with 'ggplot2', together with specializations of ggplot() and plot() methods for spectral data stored in objects of the classes defined in package 'photobiology' and a plot() method for objects of class "waveband", also defined in package 'photobiology'.

Browse man pages Browse package API and functions Browse package files

AuthorPedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]
Date of publication2017-03-20 17:34:32 UTC
MaintainerPedro J. Aphalo <pedro.aphalo@helsinki.fi>
LicenseGPL (>= 2)
Version0.2.1
URL http://www.r4photobiology.info https://bitbucket.org/aphalo/ggspectra
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ggspectra")

Man pages

Afr_plot: Plot a filter spectrum.
A_internal_label: Absorbance axis labels
A_plot: Plot a filter spectrum.
black_or_white: Chose black vs. white color based on weighted mean of RGB...
color_chart: Create a color checker chart
counts_label: Raw-counts axis labels
cps_label: Counts-per-second axis labels
cps_plot: Plot an instrument counts spectrum.
decode_annotations: Merge user supplied annotations with default ones
decoration: Add decorations to spectrum plot (private)
e_plot: Plot a source spectrum.
e_rsp_plot: Plot method for response spectra.
exponent2prefix: SI unit prefixes
geom_spct: Spectral data plots.
gg2spectra-ggproto: 'Stat*' Objects
ggplot: Create a new ggplot plot from spectral data.
ggspectra-package: ggspectra: Extensions to 'ggplot2' for Radiation Spectra
multiplot: Multiple plot function
O_plot: Plot an object spectrum
plot.cps_spct: Plot method for spectra expressed as detector counts per...
plot.filter_spct: Plot method for filter spectra.
plot.object_spct: Plot method for object spectra.
plot.raw_spct: Plot method for spectra expressed as raw detector counts.
plot.reflector_spct: Plot method for reflector spectra.
plot.response_spct: Plot method for response spectra.
plot.source_spct: Plot method for light-source spectra.
plot.waveband: Plot method for waveband objects.
q_plot: Plot a source spectrum.
q_rsp_plot: Plot a response spectrum.
raw_plot: Plot method for spectra expressed as raw detector counts.
Rfr_specular_label: Reflectance axis labels
R_plot: Plot a reflector spectrum
scale_x_wl_continuous: Wavelength x-scale
scale_y_A_internal_continuous: Absorbance y-scale
scale_y_counts_continuous: Raw-counts y-scale
scale_y_cps_continuous: Counts-per-second y-scale
scale_y_Rfr_specular_continuous: Reflectance y-scale
scale_y_s.e.irrad_continuous: Spectral irradiance y-scale
scale_y_s.e.response_continuous: Spectral response y-scale
scale_y_Tfr_internal_continuous: Transmittance y-scale
sec_axis_w_number: Secondary axes for wavelengths
s.e.irrad_label: spectral irradiance axis labels
s.e.response_label: spectral response axis labels
SI_pl_format: Formatter for plain labels discounting for SI multipliers
SI_tg_format: Formatter for tagged labels using SI multipliers
stat_color: Calculate colours from wavelength.
stat_label_peaks: Label peaks and valleys.
stat_peaks: Find peaks and valleys.
stat_wb_box: Draw colour boxes for wavebands
stat_wb_column: Integrate ranges under curve.
stat_wb_contribution: Integrate ranges under spectral curve.
stat_wb_hbar: Integrate ranges under curve.
stat_wb_irrad: Integrate irradiance for wavebands.
stat_wb_label: Label ranges under spectral curve.
stat_wb_mean: Integrate ranges under curve.
stat_wb_relative: Integrate ranges under spectral curve.
stat_wb_sirrad: Integrate spectral irradiance for wavebands.
stat_wb_total: Integrate ranges under spectral curve.
stat_wl_strip: Calculate colours from wavelength.
stat_wl_summary: Average area under curve for regions.
Tfr_internal_label: Transmittance axis labels
T_plot: Plot a filter spectrum.
w_length_label: Wave- axis labels
w_number: Wavelength conversions

Functions

A_internal_label Man page Source code
A_plot Man page Source code
A_total_label Man page Source code
Afr_plot Man page Source code
GeomSpct Man page
O_plot Man page Source code
R_plot Man page Source code
Rfr_specular_label Man page Source code
Rfr_total_label Man page Source code
SI_pl_format Man page Source code
SI_plain Man page Source code
SI_tagged Man page Source code
SI_tg_format Man page Source code
StatColor Man page
StatColorGuide Man page
StatLabelPeaks Man page
StatLabelValleys Man page
StatPeaks Man page
StatValleys Man page
StatWbBox Man page
StatWbColumn Man page
StatWbContrib Man page
StatWbHbar Man page
StatWbIrrad Man page
StatWbLabel Man page
StatWbMean Man page
StatWbRelative Man page
StatWbSIrrad Man page
StatWbTotal Man page
StatWlSummary Man page
Stats Man page Man page
T_plot Man page Source code
Tfr_internal_label Man page Source code
Tfr_total_label Man page Source code
black_or_white Man page Source code
color_chart Man page Source code
counts_label Man page Source code
cps_label Man page Source code
cps_plot Man page Source code
decode_annotations Man page Source code
decoration Man page Source code
e_plot Man page Source code
e_rsp_plot Man page Source code
exponent2factor Man page Source code
exponent2prefix Man page Source code
exponent2prefix_name Man page Source code
geom_spct Man page Source code
ggplot Man page
ggplot.cps_spct Man page Source code
ggplot.filter_spct Man page Source code
ggplot.raw_spct Man page Source code
ggplot.reflector_spct Man page Source code
ggplot.response_spct Man page Source code
ggplot.source_spct Man page Source code
ggspectra Man page
ggspectra-package Man page
has_SI_prefix Man page Source code
multiplot Man page Source code
nearest_SI_exponent Man page Source code
plot.cps_spct Man page Source code
plot.filter_spct Man page Source code
plot.object_spct Man page Source code
plot.raw_spct Man page Source code
plot.reflector_spct Man page Source code
plot.response_spct Man page Source code
plot.source_spct Man page Source code
plot.waveband Man page Source code
prefix2exponent Man page Source code
prefix_name2exponent Man page Source code
q_plot Man page Source code
q_rsp_plot Man page Source code
raw_plot Man page Source code
s.e.irrad_label Man page Source code
s.e.response_label Man page Source code
s.q.irrad_label Man page Source code
s.q.response_label Man page Source code
scale_x_wl_continuous Man page Source code
scale_y_A_internal_continuous Man page Source code
scale_y_A_total_continuous Man page Source code
scale_y_Rfr_specular_continuous Man page Source code
scale_y_Rfr_total_continuous Man page Source code
scale_y_Tfr_internal_continuous Man page Source code
scale_y_Tfr_total_continuous Man page Source code
scale_y_counts_continuous Man page Source code
scale_y_counts_tg_continuous Man page Source code
scale_y_cps_continuous Man page Source code
scale_y_s.e.irrad_continuous Man page Source code
scale_y_s.e.response_continuous Man page Source code
scale_y_s.q.irrad_continuous Man page Source code
scale_y_s.q.response_continuous Man page Source code
sec_axis_w_frequency Man page Source code
sec_axis_w_number Man page Source code
stat_color Man page Source code
stat_label_peaks Man page Source code
stat_label_valleys Man page Source code
stat_peaks Man page Source code
stat_valleys Man page Source code
stat_wb_box Man page Source code
stat_wb_column Man page Source code
stat_wb_contribution Man page Source code
stat_wb_e_irrad Man page Source code
stat_wb_e_sirrad Man page Source code
stat_wb_hbar Man page Source code
stat_wb_irrad Man page Source code
stat_wb_label Man page Source code
stat_wb_mean Man page Source code
stat_wb_q_irrad Man page Source code
stat_wb_q_sirrad Man page Source code
stat_wb_relative Man page Source code
stat_wb_sirrad Man page Source code
stat_wb_total Man page Source code
stat_wl_strip Man page Source code
stat_wl_summary Man page Source code
w_frequency Man page Source code
w_frequency_label Man page Source code
w_length_label Man page Source code
w_number Man page Source code
w_number_label Man page Source code
wl_guide Man page Source code

Files

inst
inst/staticdocs
inst/staticdocs/README.md
inst/staticdocs/index.r
inst/CITATION
inst/doc
inst/doc/user-guide.Rmd
inst/doc/plot-methods.Rmd
inst/doc/plot-methods.R
inst/doc/plot-methods.html
inst/doc/user-guide.html
inst/doc/user-guide.R
NAMESPACE
NEWS
R
R/si-prefixes.R
R/ggplot-methods.R
R/plot-cps-spct.R
R/axis-utils-raw-spct.R
R/stat-wb-relative.R
R/decoration.R
R/axis-utils_wlength.R
R/stat-wb-column.R
R/stat-wl-summary.R
R/axis-utils-cps-spct.R
R/plot-filter-spct.R
R/geom-spct.R
R/stat-wl-strip.R
R/stat-wb-mean.R
R/stat-color.R
R/ggspectra.R
R/stat-wb-hbar.R
R/stat-wb-label.R
R/plot-raw-spct.R
R/stat-label-peaks.R
R/plot-waveband.R
R/multiplot.R
R/stat-wb-box.R
R/stat-peaks.R
R/stat-wb-sirrad.R
R/plot-source-spct.R
R/stat-wb-contribution.R
R/axis-utils-filter-spct.R
R/plot-response-spct.R
R/axis-utils-response-spct.R
R/stat-wb-irrad.R
R/color-chart.R
R/stat-wb-total.R
R/axis-utils-source-spct.R
vignettes
vignettes/user-guide.Rmd
vignettes/plot-methods.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/gg2spectra-ggproto.Rd
man/stat_wb_sirrad.Rd
man/s.e.response_label.Rd
man/stat_wb_relative.Rd
man/w_number.Rd
man/stat_wb_mean.Rd
man/q_rsp_plot.Rd
man/plot.raw_spct.Rd
man/A_plot.Rd
man/plot.reflector_spct.Rd
man/stat_wb_contribution.Rd
man/cps_label.Rd
man/Tfr_internal_label.Rd
man/stat_wl_strip.Rd
man/plot.object_spct.Rd
man/scale_y_s.e.irrad_continuous.Rd
man/Afr_plot.Rd
man/s.e.irrad_label.Rd
man/stat_label_peaks.Rd
man/stat_wb_irrad.Rd
man/scale_y_A_internal_continuous.Rd
man/sec_axis_w_number.Rd
man/plot.waveband.Rd
man/stat_wb_total.Rd
man/plot.response_spct.Rd
man/ggspectra-package.Rd
man/stat_peaks.Rd
man/black_or_white.Rd
man/R_plot.Rd
man/plot.cps_spct.Rd
man/scale_y_cps_continuous.Rd
man/stat_color.Rd
man/e_rsp_plot.Rd
man/plot.source_spct.Rd
man/stat_wb_label.Rd
man/counts_label.Rd
man/stat_wb_hbar.Rd
man/stat_wb_column.Rd
man/T_plot.Rd
man/O_plot.Rd
man/scale_y_s.e.response_continuous.Rd
man/multiplot.Rd
man/scale_x_wl_continuous.Rd
man/plot.filter_spct.Rd
man/A_internal_label.Rd
man/w_length_label.Rd
man/Rfr_specular_label.Rd
man/decode_annotations.Rd
man/SI_pl_format.Rd
man/stat_wb_box.Rd
man/scale_y_Tfr_internal_continuous.Rd
man/geom_spct.Rd
man/SI_tg_format.Rd
man/scale_y_counts_continuous.Rd
man/exponent2prefix.Rd
man/decoration.Rd
man/scale_y_Rfr_specular_continuous.Rd
man/raw_plot.Rd
man/e_plot.Rd
man/stat_wl_summary.Rd
man/color_chart.Rd
man/cps_plot.Rd
man/q_plot.Rd
man/ggplot.Rd
ggspectra documentation built on May 19, 2017, 11:17 a.m.