gjam: Generalized Joint Attribute Modeling

Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling.

Author
James S. Clark, Daniel Taylor-Rodriquez
Date of publication
2016-11-29 15:08:37
Maintainer
James S. Clark <jimclark@duke.edu>
License
GPL (>= 2)
Version
2.1

View on CRAN

Man pages

gjamCensorY
Censor gjam response data
gjamDeZero
Compress (de-zero) gjam data
gjamGibbs
Gibbs sampler for gjam data
gjamIIE
Indirect effects and interactions for gjam data
gjamIIEplot
Plots indirect effects and interactions for gjam data
gjamOrdination
Ordinate gjam data
gjam-package
Generalized Joint Attribute Modeling
gjamPlot
Plot gjam analysis
gjamPoints2Grid
Incidence point pattern to grid counts
gjamPredict
Predict gjam data
gjamReZero
Expand (re-zero) gjam data
gjamSimData
Simulated data for gjam analysis
gjamSpec2Trait
Ecological traits for gjam analysis
gjamTrimY
Trim gjam response data

Files in this package

gjam
gjam/inst
gjam/inst/CITATION
gjam/inst/doc
gjam/inst/doc/gjamTraitsVignette.html
gjam/inst/doc/gjamDimRedVignette.R
gjam/inst/doc/gjamVignette.Rmd
gjam/inst/doc/gjamDimRedVignette.html
gjam/inst/doc/gjamVignette.R
gjam/inst/doc/gjamDimRedVignette.Rmd
gjam/inst/doc/gjamTraitsVignette.Rmd
gjam/inst/doc/gjamVignette.html
gjam/inst/doc/gjamTraitsVignette.R
gjam/src
gjam/src/Makevars
gjam/src/Makevars.win
gjam/src/RcppExports.cpp
gjam/src/cppFns.cpp
gjam/NAMESPACE
gjam/R
gjam/R/gjamPlot.r
gjam/R/gjamPredict.r
gjam/R/gjamPoints2Grid.R
gjam/R/gjamReZero.r
gjam/R/gjamHfunctions.R
gjam/R/RcppExports.R
gjam/R/gjamDeZero.r
gjam/R/gjamOrdination.R
gjam/R/gjamSpec2Trait.r
gjam/R/gjamGibbs.r
gjam/R/gjamTrimY.r
gjam/R/gjamIIEplot.r
gjam/R/gjamSimData.r
gjam/R/gjamCensorY.r
gjam/R/gjamIIE.r
gjam/vignettes
gjam/vignettes/gjamVignette.Rmd
gjam/vignettes/gjamDimRedVignette.Rmd
gjam/vignettes/gjamTraitsVignette.Rmd
gjam/MD5
gjam/build
gjam/build/vignette.rds
gjam/DESCRIPTION
gjam/man
gjam/man/gjamPoints2Grid.Rd
gjam/man/gjamSpec2Trait.Rd
gjam/man/gjamPlot.Rd
gjam/man/gjamSimData.Rd
gjam/man/gjamCensorY.Rd
gjam/man/gjamPredict.Rd
gjam/man/gjam-package.Rd
gjam/man/gjamOrdination.Rd
gjam/man/gjamReZero.Rd
gjam/man/gjamDeZero.Rd
gjam/man/gjamGibbs.Rd
gjam/man/gjamTrimY.Rd
gjam/man/gjamIIE.Rd
gjam/man/gjamIIEplot.Rd