getcut: Get optimal cut points for binary or right censored phenotype

In glmaag: Adaptive LASSO and Network Regularized Generalized Linear Models

Description

Obtain optimal cut point based on Youden index for binary phenotype and log rank test for right censored phenotype.

Usage

getcut(pre, act, fam = "Logistic")

Arguments

pre	predicted value
act	actual values (class for binary phenotype and Surv object for right censored phenotype)
fam	the family of the outcome, can be "Gaussian", "Logistic" or "Cox"

Value

optimal cut point

Examples

x <- rnorm(100)
y <- as.numeric(x + rlogis(100) > 0)
getcut(x, y)

glmaag documentation built on May 10, 2019, 9:04 a.m.