Man pages for glmmSeq
General Linear Mixed Models for Gene-Level Differential Expression
| fcPlot | Plotly or ggplot fold change plots |
| ggmodelPlot | Mixed model effects plot using ggplot2 |
| glmmQvals | Glmm Sequencing qvalues |
| glmmRefit | Refit mixed effects model |
| glmmSeq | GLMM with negative binomial distribution for sequencing count... |
| GlmmSeq-class | An S4 class to define the glmmSeq output |
| lmmSeq | Linear mixed models for data matrix |
| lmmSeq-class | An S4 class to define the lmmSeq output |
| maPlot | MA plots |
| metadata | Minimal metadata from PEAC |
| modelPlot | Mixed model effects plot |
| summary.lmmSeq | Summarise a 'glmmSeq'/'lmmSeq' object |
| tpm | TPM count data from PEAC |
