GlmmSeq-class: An S4 class to define the glmmSeq output

In glmmSeq: General Linear Mixed Models for Gene-Level Differential Expression

An S4 class to define the glmmSeq output

Description

An S4 class to define the glmmSeq output

Slots

info

List including the matched call, dispersions, offset, designMatrix

formula

The model formula

stats

Statistics from fitted models

predict

Predicted values

reduced

Optional reduced formula for LRT

countdata

The input expression data with count data in rows

metadata

The input metadata

modelData

Model data for predictions

optInfo

Information on whether the model was singular or converged

errors

Any errors

vars

List of variables stored from the original call, including the id variable (by default automatically identified from the random effect term in the model) and removeSingles argument

glmmSeq documentation built on Nov. 5, 2025, 6:30 p.m.