summary.lmmSeq: Summarise a 'glmmSeq'/'lmmSeq' object

In glmmSeq: General Linear Mixed Models for Gene-Level Differential Expression

Summarise a 'glmmSeq'/'lmmSeq' object

Description

Summarise results from glmmSeq or lmmSeq analysis

Usage

## S3 method for class 'lmmSeq'
summary(object, gene = NULL, digits = max(3L, getOption("digits") - 3L), ...)

## S3 method for class 'GlmmSeq'
summary(object, gene = NULL, ...)

Arguments

object	an object of class "GlmmSeq" or "lmmSeq"
gene	an optional character value specifying a single gene whose results are summarised
digits	integer, used for number formatting
...	arguments to be passed to other methods

Value

If gene=NULL a dataframe of results for all genes is returned. Otherwise the output of GLMM or LMM model results for a single gene including coefficients, test statistics, p-values is printed and the dataframe for all genes is returned invisibly.

See Also

glmmSeq(), lmmSeq()

glmmSeq documentation built on Oct. 8, 2022, 5:05 p.m.