API for goat
Gene Set Analysis Using the Gene Set Ordinal Association Test
| Global functions | |
|---|---|
| .onUnload | Source code |
| available_genesets_goatrepo | Man page Source code |
| build_treemap | Source code |
| check_dependency | Source code |
| cluster_genesets | Man page Source code |
| darken_color | Man page Source code |
| download_genesets_goatrepo | Man page Source code |
| download_goat_manuscript_data | Man page Source code |
| dsnorm | Source code |
| edgelist_as_nested | Source code |
| edgelist_find_children_recursive | Source code |
| edgelist_find_colored_parents_recursive | Source code |
| edgelist_find_root | Source code |
| edgelist_from_ontology | Source code |
| filter_genesets | Man page Source code |
| fit_snorm_xi | Source code |
| geneset_similarity_matrix | Source code |
| genesets_as_matrix | Source code |
| gg_color_hue | Man page Source code |
| go_find_parents | Source code |
| go_gene2go | Man page Source code |
| go_obo | Man page Source code |
| goat | Man page |
| goat-package | Man page |
| goat_apply_precomputed_null | Source code |
| goat_logo | Man page Source code |
| goat_nulldistribution_function | Source code |
| goat_nulldistribution_function_generator | Source code |
| goat_nulldistribution_independent | Source code |
| goat_nulldistributions | Man page |
| goat_print_version | Man page Source code |
| goat_testgene_score_matrix | Source code |
| goat_version | Man page Source code |
| hgnc_idmap_table | Man page Source code |
| isvalid_color | Source code |
| lighten_color | Man page Source code |
| load_genesets_gmtfile | Man page Source code |
| load_genesets_go_bioconductor | Man page Source code |
| load_genesets_go_fromfile | Man page Source code |
| load_genesets_syngo | Man page Source code |
| methods_text | Source code |
| minlog10_fixzero | Man page Source code |
| nested_aggregate_child_stats | Source code |
| nested_find_equivalent_child_recursive | Source code |
| nested_find_level1_children | Source code |
| ontology_data_structures | Source code |
| padjust_genesets | Man page Source code |
| parameters_prettyprint_length1 | Source code |
| partition_genes | Man page Source code |
| plot_heatmap | Man page Source code |
| plot_lollipop | Man page Source code |
| plot_network | Man page Source code |
| plot_volcano | Man page Source code |
| psnorm_upper_tail | Source code |
| rankscore | Man page Source code |
| rankscore_fixed_order | Man page Source code |
| rcpp_dsnorm_logsum | Source code |
| rcpp_gene_to_geneset_scores | Source code |
| rcpp_geneset_null | Source code |
| rcpp_null_distributions | Source code |
| reduce_genesets | Man page Source code |
| save_genesets | Man page Source code |
| score_geneset_directionality | Man page Source code |
| score_geneset_oddsratio | Man page Source code |
| string_trunc_right | Man page Source code |
| symbol_to_entrez | Man page Source code |
| taxonomy_identifiers | Man page Source code |
| test_genesets | Man page Source code |
| test_genesets_fisherexact | Man page Source code |
| test_genesets_goat | Source code |
| test_genesets_goat_bootstrap | Man page Source code |
| test_genesets_goat_fitfunction | Man page Source code |
| test_genesets_goat_precomputed | Man page Source code |
| test_genesets_gsea | Man page Source code |
| test_genesets_hypergeometric | Man page Source code |
| treemap_data | Man page Source code |
| treemap_plot | Man page Source code |
| validate_genelist | Source code |
| validate_genesets | Source code |
| validate_goat_genelist | Source code |
| validate_goat_genesets | Source code |
| validate_goat_niter | Source code |
| validate_goat_scoretype | Source code |
| validate_goat_verbose | Source code |
