plot_network: plot geneset distance matrix as a network
In goat: Gene Set Analysis Using the Gene Set Ordinal Association Test

plot_network

R Documentation

plot geneset distance matrix as a network

Description

plot geneset distance matrix as a network

Usage

plot_network(
  clusters,
  src,
  show_clusters = TRUE,
  show_text = FALSE,
  topn_edges = 5,
  clr_default = "#29b6f6",
  node_color_palette = goat::gg_color_hue
)

Arguments

`clusters`	result from `cluster_genesets`
`src`	source property (e.g. "GO_CC")
`show_clusters`	boolean value
`show_text`	boolean value
`topn_edges`	topN edges to retain per geneset (typically 5~8)
`clr_default`	default color for the network, used only when `show_clusters` is set to `FALSE`
`node_color_palette`	function with 1 parameter, N, that returns N colors (default is goat function `gg_color_hue`)