plot_network: plot geneset distance matrix as a network

In goat: Gene Set Analysis Using the Gene Set Ordinal Association Test

plot geneset distance matrix as a network

Description

plot geneset distance matrix as a network

Usage

plot_network(
  clusters,
  src,
  show_clusters = TRUE,
  show_text = FALSE,
  topn_edges = 5,
  clr_default = "#29b6f6",
  node_color_palette = goat::gg_color_hue
)

Arguments

clusters	result from cluster_genesets
src	source property (e.g. "GO_CC")
show_clusters	boolean value
show_text	boolean value
topn_edges	topN edges to retain per geneset (typically 5~8)
clr_default	default color for the network, used only when show_clusters is set to FALSE
node_color_palette	function with 1 parameter, N, that returns N colors (default is goat function gg_color_hue)

Value

a ggplot2 object

goat documentation built on April 3, 2025, 6:05 p.m.