cluster_genesets: cluster significant genesets from 'test_genesets()' by...

In goat: Gene Set Analysis Using the Gene Set Ordinal Association Test

cluster significant genesets from test_genesets() by geneset similarity (separately for each 'geneset source')

Description

cluster significant genesets from test_genesets() by geneset similarity (separately for each 'geneset source')

Usage

cluster_genesets(x, genelist, hclust_method = "ward.D2")

Arguments

x	results from test_genesets()
genelist	should be the same as provided to test_genesets()
hclust_method	hierarchical clustering method, any of; 'ward.D', 'ward.D2' (default), 'single', 'complete', 'average'

Value

a list with elements genesets (param x), similarity, hc_row, hc_col

goat documentation built on April 3, 2025, 6:05 p.m.