test_genesets_goat_bootstrap: Naive GOAT variant where we estimate null parameters for each...

In goat: Gene Set Analysis Using the Gene Set Ordinal Association Test

Naive GOAT variant where we estimate null parameters for each geneset size independently

Description

In typical use-cases, one applies test_genesets() instead with parameter method="goat" , which in turn will use test_genesets_goat_precomputed (and not this function).

Usage

test_genesets_goat_bootstrap(
  genesets,
  genelist,
  score_type,
  niter = 5e+05,
  verbose = FALSE
)

Arguments

genesets	see test_genesets_goat_precomputed
genelist	see test_genesets_goat_precomputed
score_type	see test_genesets_goat_precomputed
niter	integer number of bootstrap iterations; at least 10000, at most 5000000
verbose	boolean, create debug plots

Value

see test_genesets_goat_precomputed

goat documentation built on April 3, 2025, 6:05 p.m.