gpDDE: General Profiling Method for Delay Differential Equation

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Functions implement collocation-inference for stochastic process driven by distributed delay differential equations. They also provide tools for selecting the lags for distributed delay using shrinkage methods, estimating time-varying coefficients, and tools for inference and prediction.

Author
Ziqian Zhou [aut, cre], Kung-Sik Chan [aut]
Date of publication
2015-12-16 23:25:34
Maintainer
Ziqian Zhou <ziqian-zhou@uiowa.edu>
License
GPL (>= 2)
Version
0.8.2

View on CRAN

Man pages

blowflydata
Nicholson's Blowflies Data.
DDEdiag
Time Series Diagnostics for the Residuals
DSIRdata
Simulated dataset from a delay SIR model
DSIR.fit
Fitted Delay SIR model
DSIRfn.make
Make DTVSIR functions
DSIRInitCoefs
Initial values for the spline coefficients for the Delay SIR...
DTVSIRfn.make
Make DTVSIR functions
forecast.DDE
Compute and Plot the Forecasts Based on a Fitted DDE Model
inneropt.DDE
Inner optimization for estmating coefficients given...
IntegrateForward.DDE
Intergrate Forward a DDE Model
make.vector.disease.fn
Make Vector Disease functions
Profile.LS.DDE
Profile Estimation Functions for DDE
Profile.LS.TV.DDE
Profile Estimation Functions for DDE with Time Varying...
ProfileSSE.covariance.DDE
ProfileSSE.covariance.DDE
sparse.DDE
Sparsity selection for the lags of delay.
sparse.TV.DDE
Sparsity selection for the lags of delay and time varying...

Files in this package

gpDDE
gpDDE/NAMESPACE
gpDDE/data
gpDDE/data/DSIRdata.RData
gpDDE/data/DSIR.fit.rda
gpDDE/data/blowflydata.RData
gpDDE/data/DSIRinit.RData
gpDDE/R
gpDDE/R/LS.dde.R
gpDDE/R/IntegrateForward.DDE.R
gpDDE/R/forecast.DDE.R
gpDDE/R/data.R
gpDDE/R/timevar.R
gpDDE/R/make.DSIR.R
gpDDE/R/tv-delay.R
gpDDE/R/tv-delay-cov.R
gpDDE/R/DDEdiag.R
gpDDE/R/poslasso.R
gpDDE/R/dde.R
gpDDE/R/vector.D.funcs.R
gpDDE/R/make.blowfly.R
gpDDE/MD5
gpDDE/DESCRIPTION
gpDDE/man
gpDDE/man/DSIR.fit.Rd
gpDDE/man/inneropt.DDE.Rd
gpDDE/man/Profile.LS.DDE.Rd
gpDDE/man/DSIRInitCoefs.Rd
gpDDE/man/sparse.DDE.Rd
gpDDE/man/DSIRfn.make.Rd
gpDDE/man/DSIRdata.Rd
gpDDE/man/make.vector.disease.fn.Rd
gpDDE/man/sparse.TV.DDE.Rd
gpDDE/man/Profile.LS.TV.DDE.Rd
gpDDE/man/DDEdiag.Rd
gpDDE/man/DTVSIRfn.make.Rd
gpDDE/man/IntegrateForward.DDE.Rd
gpDDE/man/blowflydata.Rd
gpDDE/man/ProfileSSE.covariance.DDE.Rd
gpDDE/man/forecast.DDE.Rd