Genomic biology is not limited to the confines of the canonical B- forming DNA duplex, but includes over ten different types of other secondary structures that are collectively termed non-B DNA structures. Of these non-B DNA structures, the G-quadruplexes are highly stable four-stranded structures that are recognized by distinct subsets of nuclear factors. This package provide functions for predicting intramolecular G quadruplexes. In addition, functions for predicting other intramolecular nonB DNA structures are included.
|Author||Hannah O. Ajoge|
|Date of publication||2017-03-02 21:06:53|
|Maintainer||Hannah O. Ajoge <email@example.com>|
aphased: Predicting A-phased DNA repeat(s)
gquad: Predicting G quadruplexes
gquadO: Predicting G quadruplexes including overlaps
hdna: Predicting intramolecular triplexes (H-DNA)
hdnaO: Predicting intramolecular triplexes (H-DNA) including...
slipped: Predicting slipped motif(s)
str: Predicting short tandem repeats
tfo: Predicting triplex forming oligonucleotide(s)
zdna: Predicting Z-DNA motif(s)