CreateConvolutionTable: Create Convolution Table from a Seurat object

In grandR: Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Create Convolution Table from a Seurat object

Description

Create Convolution Table from a Seurat object

Usage

CreateConvolutionTable(data, n.neighbors = 20, group.column = "Condition", ...)

Arguments

data	a Seurat object
n.neighbors	the number of neighbors to be convoluted
group.column	character specifying a column to split data by or NULL (see details)
...	additional parameters for FindNeighbors

Details

This function returns a table which can be used as input for GRAND3. Note that a data set containing multiple time points should be split for convolution (can be done by specifying a group.column).

Value

a table with two columns "Cell" and "Pseudobulk"

grandR documentation built on Jan. 14, 2026, 5:08 p.m.