CreatePseudobulkTable: Create Pseudobulk Table from a Seurat object

In grandR: Comprehensive Analysis of Nucleotide Conversion Sequencing Data

Create Pseudobulk Table from a Seurat object

Description

Create Pseudobulk Table from a Seurat object

Usage

CreatePseudobulkTable(
  data,
  name.column = "Name",
  pseudobulk.column = "Condition"
)

Arguments

data	a Seurat object
name.column	name of the metadata column containing the sample/cell names. Default "Name".
pseudobulk.column	name of the metadata column containing the Pseudobulk names. Default "Condition".

Details

This function returns a table which can be used as input for GRAND3

Value

a table with two columns "Cell" and "Pseudobulk"

grandR documentation built on April 4, 2025, 2:27 a.m.