calculate_distance: Calculate distance between sample data before and after...

In greatR: Gene Registration from Expression and Time-Courses in R

Calculate distance between sample data before and after registration

Description

calculate_distance() is a function that allows users to calculate pairwise distances between samples from different time points to investigate the similarity of progression before or after registration.

Usage

calculate_distance(results, type = c("registered", "all"), genes_list = NULL)

Arguments

results	Result of registration process using register().
type	Whether to calculate distance considering only "registered" genes (default) or "all" genes.
genes_list	Optional vector indicating the gene_id values to be considered.

Value

This function returns a dist_greatR object containing two data frames:

registered	pairwise distance between scaled reference and query expressions using registered time points.
original	pairwise distance between scaled reference and query expressions using original time points.

greatR documentation built on May 29, 2024, 12:18 p.m.