Plotting, Smoothing and Growth Trait Extraction for Longitudinal Data

anom | Tests if any values in a vector are anomalous in being... |

calcLagged | Replaces the values in a vector with the result of applying... |

calcTimes | Calculates for a set of times, the time intervals after an... |

cumulate | Calculates the cumulative sum, ignoring the first element if... |

designFactors | Adds the factors and covariates for a blocked, split-plot... |

exampleData | A small data set to use in function examples |

fitSpline | Produce the fits from a natural cubic smoothing spline... |

getTimesSubset | Forms a subset of 'responses' in 'data' that contains their... |

growthPheno-deprecated | Deprecated Functions in the Package asremlPlus |

growthPheno-pkg | Plotting, Smoothing and Growth Trait Extraction for... |

GrowthRates | Calculates growth rates (AGR, PGR, RGRdiff) between pairs of... |

importExcel | Imports an Excel imaging file and allows some renaming of... |

intervalGRaverage | Calculates the growth rates for a specified time interval by... |

intervalGRdiff | Calculates the growth rates for a specified time interval |

intervalPVA.data.frame | Selects a subset of variables using Principal Variable... |

intervalValueCalculate | Calculates a single value that is a function of an... |

intervalWUI | Calculates water use indices (WUI) over a specified time... |

longitudinalPrime | Selects a set variables to be retained in a data frame of... |

plotAnom | Identifies anomalous individuals and produces longitudinal... |

plotCorrmatrix | Calculates and plots correlation matrices for a set of... |

plotDeviationsBoxes | Produces boxplots of the deviations of the observed values... |

plotImagetimes | Plots the position of a time within an interval against the... |

plotLongitudinal | Plots longitudinal data for a set of indiividuals |

plotMedianDeviations | Calculates and plots the median of the deviations of the... |

probeDF | Compares, for a set of specified values of df, a response and... |

probeSmoothing | Compares, for a set of specified values of df and different... |

PVA | Selects a subset of variables using Principal Variable... |

PVA.data.frame | Selects a subset of variables stored in a data.frame using... |

PVA.matrix | Selects a subset of variables using Principal Variable... |

rcontrib | Computes a measure of how correlated each variable in a set... |

rcontrib.data.frame | Computes a measure of how correlated each variable in a set... |

rcontrib.matrix | Computes a measure of how correlated each variable in a set... |

RiceRaw.dat | Data for an experiment to investigate a rice germplasm panel |

splitContGRdiff | Adds the growth rates calculated continuously over time for... |

splitSplines | Adds the fits, and optionally growth rates computed from... |

splitValueCalculate | Calculates a single value that is a function of an... |

tomato.dat | Longitudinal data for an experiment to investigate tomato... |

twoLevelOpcreate | Creates a data.frame formed by applying, for each response, a... |

WUI | Calculates the Water Use Index (WUI) |

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