| anom | Tests if any values in a vector are anomalous in being... |
| args4chosen_plot | Creates a 'list' of the values for the options of profile... |
| args4chosen_smooth | Creates a 'list' of the values for the smoothing parameters... |
| args4devnboxes_plot | Creates a 'list' of the values for the options of profile... |
| args4meddevn_plot | Creates a 'list' of the values for the options of median... |
| args4profile_plot | Creates a 'list' of the values for the options of profile... |
| args4smoothing | Creates a 'list' of the values for the smoothing parameters... |
| as.smooths.frame | Forms a 'smooths.frame' from a 'data.frame', ensuring that... |
| byIndv4Intvl_GRsAvg | Calculates the growth rates for a specified time interval for... |
| byIndv4Intvl_GRsDiff | Calculates the growth rates for a specified time interval for... |
| byIndv4Intvl_ValueCalc | Calculates a single value that is a 'function' of the values... |
| byIndv4Intvl_WaterUse | Calculates, water use traits (WU, WUR, WUI) over a specified... |
| byIndv4Times_GRsDiff | Adds, to a 'data.frame', the growth rates calculated for... |
| byIndv4Times_SplinesGRs | For a response in a 'data.frame' in long format, computes,... |
| byIndv_ValueCalc | Calculates a single value that is a function of an... |
| calcLagged | Replaces the values in a vector with the result of applying... |
| calcTimes | Calculates for a set of times, the time intervals after an... |
| cumulate | Calculates the cumulative sum, ignoring the first element if... |
| designFactors | Adds the factors and covariates for a blocked, split-unit... |
| exampleData | A small data set to use in function examples |
| fitSpline | Fits a spline to a 'response' in a 'data.frame', and growth... |
| getTimesSubset | Forms a subset of 'responses' in 'data' that contains their... |
| growthPheno-deprecated | Deprecated Functions in the Package growthPheno |
| growthPheno-pkg | Functional Analysis of Phenotypic Growth Data to Smooth and... |
| GrowthRates | Calculates growth rates (AGR, PGR, RGRdiff) between pairs of... |
| importExcel | Imports an Excel imaging file and allows some renaming of... |
| intervalGRaverage | Calculates the growth rates for a specified time interval by... |
| intervalGRdiff | Calculates the growth rates for a specified time interval |
| intervalPVA.data.frame | Selects a subset of variables using Principal Variable... |
| intervalValueCalculate | Calculates a single value that is a function of an... |
| intervalWUI | Calculates water use indices (WUI) over a specified time... |
| is.smooths.frame | Tests whether an object is of class smooths.frame |
| longitudinalPrime | Selects a set variables to be retained in a data frame of... |
| plotAnom | Identifies anomalous individuals and produces profile plots... |
| plotCorrmatrix | Calculates and plots correlation matrices for a set of... |
| plotDeviationsBoxes | Produces boxplots of the deviations of the observed values... |
| plotImagetimes | Plots the position of a time within an interval against the... |
| plotLongitudinal | Produces profile plots of longitudinal data for a set of... |
| plotMedianDeviations | Calculates and plots the median of the deviations of the... |
| plotProfiles | Produces profile plots of longitudinal data for a set of... |
| plotSmoothsComparison | Plots several sets of smoothed values for a response,... |
| plotSmoothsDevnBoxplots | Produces boxplots for several sets of deviations of the... |
| plotSmoothsMedianDevns | Calculates and plots the medians of the deviations from the... |
| prepImageData | Prepares raw imaging data for further processing |
| probeSmoothing | Compares, for a set of specified values of df and different... |
| probeSmooths | For a response in a 'data.frame' in long format, computes and... |
| PVA | Selects a subset of variables using Principal Variable... |
| PVA.data.frame | Selects a subset of variables stored in a data.frame using... |
| PVA.matrix | Selects a subset of variables using Principal Variable... |
| rcontrib | Computes a measure of how correlated each variable in a set... |
| rcontrib.data.frame | Computes a measure of how correlated each variable in a set... |
| rcontrib.matrix | Computes a measure of how correlated each variable in a set... |
| RicePrepped.dat | Prepped data from an experiment to investigate a rice... |
| RiceRaw.dat | Data for an experiment to investigate a rice germplasm panel |
| smooths.frame | Description of a smooths.frame object |
| smoothSpline | Fit a spline to smooth the relationship between a 'response'... |
| splitContGRdiff | Adds, to a 'data.frame', the growth rates for individuals... |
| splitSplines | Adds the fits, and optionally growth rates computed from... |
| splitValueCalculate | Calculates a single value that is a function of an... |
| tomato.dat | Longitudinal data for an experiment to investigate tomato... |
| traitExtractFeatures | Extract features, that are single-valued for each individual,... |
| traitSmooth | Obtain smooths for a trait by fitting spline functions and,... |
| twoLevelOpcreate | Creates a data.frame formed by applying, for each response, a... |
| validSmoothsFrame | Checks that an object is a valid 'smooths.frame'. |
| WUI | Calculates the Water Use Index (WUI) |
