auc: Calculates AUC for cv.grpsurv objects

In grpreg: Regularization Paths for Regression Models with Grouped Covariates

Description

Calculates the cross-validated AUC (concordance) from a "cv.grpsurv" object.

Usage

## S3 method for class 'cv.grpsurv'
AUC(obj, ...)

Arguments

obj	A cv.grpsurv object. You must run cv.grpsurv with the option returnY=TRUE in order for AUC to work.
...	For S3 method compatibility.

Details

The area under the curve (AUC), or equivalently, the concordance statistic (C), is calculated according to the procedure outlined in the reference below. This calls the survConcordance function in the survival package, except the cross-validated linear predictors are used to guard against overfitting. Thus, the values returned by AUC.cv.grpsurv will be lower than those you would obtain with survConcordance if you fit the full (unpenalized) model.

Author(s)

Patrick Breheny

References

van Houwelingen H, Putter H (2011). Dynamic Prediction in Clinical Survival Analysis. CRC Press.

See Also

cv.grpsurv, survConcordance

Examples

data(Lung)
X <- Lung$X
y <- Lung$y
group <- Lung$group

cvfit <- cv.grpsurv(X, y, group, returnY=TRUE)
head(AUC(cvfit))
ll <- log(cvfit$fit$lambda)
plot(ll, AUC(cvfit), xlim=rev(range(ll)), lwd=3, type='l',
     xlab=expression(log(lambda)), ylab='AUC', las=1)

grpreg documentation built on July 27, 2021, 1:08 a.m.