gsEasy: Gene Set Enrichment Analysis in R

Share:

R-interface to C++ implementation of the rank/score permutation based GSEA test (Subramanian et al 2005 <doi: 10.1073/pnas.0506580102>).

Author
Daniel Greene
Date of publication
2016-08-06 22:46:34
Maintainer
Daniel Greene <dg333@cam.ac.uk>
License
GPL (>= 2)
Version
1.1

View on CRAN

Man pages

get_GO_gene_sets
Create list of gene sets defined by GO term annotation
get_ontological_gene_sets
Create list of gene sets defined by ontological annotation
GO_gene_sets
GO term gene sets
gsEasy-package
Gene Set Enrichment Analysis in R
gset
Gene set enrichment test

Files in this package

gsEasy
gsEasy/inst
gsEasy/inst/doc
gsEasy/inst/doc/gsEasy-guide.html
gsEasy/inst/doc/gsEasy-guide.R
gsEasy/inst/doc/gsEasy-guide.Rmd
gsEasy/src
gsEasy/src/RcppExports.cpp
gsEasy/src/RcppExports.h
gsEasy/NAMESPACE
gsEasy/NEWS.md
gsEasy/data
gsEasy/data/datalist
gsEasy/data/GO_gene_sets.RData
gsEasy/R
gsEasy/R/RcppExports.R
gsEasy/vignettes
gsEasy/vignettes/gsEasy-guide.Rmd
gsEasy/MD5
gsEasy/build
gsEasy/build/vignette.rds
gsEasy/DESCRIPTION
gsEasy/man
gsEasy/man/GO_gene_sets.Rd
gsEasy/man/gsEasy-package.Rd
gsEasy/man/get_ontological_gene_sets.Rd
gsEasy/man/get_GO_gene_sets.Rd
gsEasy/man/gset.Rd