SNPs_scatter_plot: Scatter plot for all the SNPs used in the analysis

In hJAM: Hierarchical Joint Analysis of Marginal Summary Statistics

Description

To generate the scatter plot of all the SNPs that the user use in the analysis

Usage

SNPs_scatter_plot(A, betas.Gy, num_X)

Arguments

A	The effects of SNPs on the exposures (Gx).
betas.Gy	The betas in the paper: the marginal effects of SNPs on the phenotype (Gy)
num_X	The number of intermediates in the research question.

Value

A set of scatter plots with x-axis being the conditional alpha estimates for each intermediate and y-axis being the beta estimates.

Author(s)

Lai Jiang

Examples

data(conditional_A)
data(betas.Gy)
t = SNPs_scatter_plot(A = conditional_A, betas.Gy = betas.Gy, num_X = 2)
t

Example output

hJAM documentation built on March 26, 2020, 8:13 p.m.