hagis: Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) <doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.

Package details

AuthorAustin G. McCoy [aut, ccp] (<https://orcid.org/0000-0003-2483-4184>), Zachary Noel [aut, ccp] (<https://orcid.org/0000-0001-6375-8300>), Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>), Martin Chilvers [aut, ths] (<https://orcid.org/0000-0001-8832-1666>), Zhian N. Kamvar [ctb, rev] (<https://orcid.org/0000-0003-1458-7108>), Michigan Soybean Promotion Committee [fnd], Project GREEEN [fnd], North Central Soybean Research Program [fnd], GRDC Project DAQ00186 [fnd]
MaintainerAdam H. Sparks <adamhsparks@gmail.com>
LicenseMIT + file LICENSE
URL https://github.com/openplantpathology/hagis https://openplantpathology.github.io/hagis/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the hagis package in your browser

Any scripts or data that you put into this service are public.

hagis documentation built on Oct. 14, 2021, 9:09 a.m.