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Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer and Schachtel's (1999) <doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.
Package details |
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Author | Austin G. McCoy [aut, ccp] (<https://orcid.org/0000-0003-2483-4184>), Zachary Noel [aut, ccp] (<https://orcid.org/0000-0001-6375-8300>), Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>), Martin Chilvers [aut, ths] (<https://orcid.org/0000-0001-8832-1666>), Zhian N. Kamvar [ctb, rev] (<https://orcid.org/0000-0003-1458-7108>), Michigan Soybean Promotion Committee [fnd], Project GREEEN [fnd], North Central Soybean Research Program [fnd], GRDC Project DAQ00186 [fnd] |
Maintainer | Adam H. Sparks <adamhsparks@gmail.com> |
License | MIT + file LICENSE |
Version | 3.1.11 |
URL | https://github.com/openplantpathology/hagis https://openplantpathology.github.io/hagis/ |
Package repository | View on CRAN |
Installation |
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