Files in hagis

Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/data.R R/calculate_complexities.R R/hagis-package.R R/create_binary_matrix.R R/internal_functions.R R/summarize_gene.R R/utils-data-table.R R/globals.R R/calculate_diversities.R

inst/CITATION

inst/WORDLIST

inst/doc/hagis.Rmd inst/doc/hagis.R

inst/doc/hagis.html

inst/doc/betadiversity.html

inst/doc/betadiversity.R inst/doc/betadiversity.Rmd

inst/paper/scholarly-metadata.lua

inst/paper/paper.docx

inst/paper/references.bib

inst/paper/author-info-blocks.lua

inst/paper/paper.Rmd

inst/paper/molecular-plant-microbe-interactions.csl

inst/paper/template.docx

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/testthat/test-calculate_diversities.R tests/testthat/test-calculate_complexities.R tests/testthat/test-create_binary_matrix.R tests/testthat/test-autoplot_rps_summary.R tests/testthat/test-diversities_table.R tests/testthat/test-autoplot_hagis_complexities.R tests/testthat/test-individual_pathotypes.R

tests/testthat/_snaps/autoplot_rps_summary/perc-summary-des-blue.svg

tests/testthat/_snaps/autoplot_rps_summary/count-summary-asc-blue.svg

tests/testthat/_snaps/autoplot_rps_summary/perc-summary.svg

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tests/testthat/_snaps/autoplot_rps_summary/count-summary.svg

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vignettes/hagis.Rmd vignettes/betadiversity.Rmd

data/P_sojae_survey.rda

data/sample_meta.rda

man/individual_pathotypes.Rd man/summarize_gene.Rd man/reexports.Rd man/hagis-package.Rd man/autoplot.hagis.gene.summary.Rd man/calculate_complexities.Rd man/calculate_diversities.Rd man/autoplot.hagis.complexities.Rd man/create_binary_matrix.Rd man/P_sojae_survey.Rd man/diversities_table.Rd man/sample_meta.Rd

hagis documentation built on Sept. 8, 2023, 5:20 p.m.