Files in hagis
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
LICENSE
R/data.R R/calculate_complexities.R R/hagis-package.R R/create_binary_matrix.R R/internal_functions.R R/summarize_gene.R R/utils-data-table.R R/calculate_diversities.R
inst/CITATION
inst/WORDLIST
inst/doc/hagis.Rmd inst/doc/hagis.R
inst/doc/hagis.html
inst/doc/betadiversity.html
inst/doc/betadiversity.R inst/doc/betadiversity.Rmd
inst/paper/scholarly-metadata.lua
inst/paper/paper.docx
inst/paper/references.bib
inst/paper/author-info-blocks.lua
inst/paper/paper.Rmd
inst/paper/molecular-plant-microbe-interactions.csl
inst/paper/template.docx
build/vignette.rds
tests/testthat.R tests/testthat/test-calculate_diversities.R tests/testthat/test-calculate_complexities.R tests/testthat/test-create_binary_matrix.R tests/testthat/test-autoplot_rps_summary.R tests/testthat/test-diversities_table.R tests/testthat/test-autoplot_hagis_complexities.R tests/testthat/test-individual_pathotypes.R tests/testthat/helper_functions.R
tests/figs/deps.txt
tests/figs/plot-hagis-gene-summary/perc-summary-des-blue.svg
tests/figs/plot-hagis-gene-summary/count-summary-asc-blue.svg
tests/figs/plot-hagis-gene-summary/perc-summary.svg
tests/figs/plot-hagis-gene-summary/perc-summary-asc-blue.svg
tests/figs/plot-hagis-gene-summary/perc-summary-blue.svg
tests/figs/plot-hagis-gene-summary/count-summary.svg
tests/figs/plot-hagis-complexities/perc-complexities-blue.svg
tests/figs/plot-hagis-complexities/count-complexities.svg
tests/figs/plot-hagis-complexities/perc-complexities-asc-blue.svg
tests/figs/plot-hagis-complexities/perc-complexities-desc-blue.svg
tests/figs/plot-hagis-complexities/perc-complexities.svg
tests/figs/plot-hagis-complexities/count-complexities-asc-blue.svg
vignettes/hagis.Rmd vignettes/betadiversity.Rmd
data/P_sojae_survey.rda
data/sample_meta.rda
man/individual_pathotypes.Rd man/summarize_gene.Rd man/reexports.Rd man/hagis-package.Rd man/autoplot.hagis.gene.summary.Rd man/calculate_complexities.Rd man/calculate_diversities.Rd man/autoplot.hagis.complexities.Rd man/create_binary_matrix.Rd man/P_sojae_survey.Rd man/diversities_table.Rd man/sample_meta.Rd
hagis documentation built on Oct. 14, 2021, 9:09 a.m.