haplotypes: Haplotype Inference and Statistical Analysis of Genetic Variation
Version 1.0

Provides S4 classes and methods for reading and manipulating aligned DNA sequences, supporting an indel coding methods (only simple indel coding method is available in the current version), showing base substitutions and indels, calculating absolute pairwise distances between DNA sequences, and inferring haplotypes from DNA sequences or user provided absolute character difference matrix. This package also includes S4 classes and methods for estimating genealogical relationships among haplotypes using statistical parsimony.

Package details

AuthorCaner Aktas
Date of publication2015-04-26 09:49:28
MaintainerCaner Aktas <[email protected]>
LicenseGPL-2
Version1.0
URL http://cran.r-project.org https://biolsystematics.wordpress.com/r/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("haplotypes")

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haplotypes documentation built on May 29, 2017, 11:04 a.m.