append-methods | Combines two 'Dna' objects |
as.data.frame-methods | Coerces a 'Dna' object to a data.frame |
as.DNAbin-methods | Coerces an object to a 'DNAbin' object |
as.dna-methods | Coerces an object to a 'Dna' object |
as.list-methods | Methods for function 'as.list' in the Package 'haplotypes' |
as.matrix-methods | Methods for function 'as.matrix' in the Package 'haplotypes' |
as.network-methods | Coerces an object to a 'network' object |
as.networx-methods | Coerces an object to a 'networx' object |
as.numeric-methods | Coerces a 'Dna' object to a numeric matrix |
as.phyDat-methods | Coerces an object to a 'phyDat' object |
basecomp-methods | Calculates base composition |
boot.dna-methods | Generates single bootstrap replicate |
distance-methods | Calculates absolute pairwise character difference matrix... |
Dna-class | Class '"Dna"' in the Package 'haplotypes' |
dna.obj | Example DNA sequence data |
grouping-methods | Groups haplotypes according to the grouping variable... |
Haplotype-class | Class '"Haplotype"' in the Package 'haplotypes' |
haplotype-methods | Methods for function 'haplotype' in the package 'haplotypes' |
haplotypes-internal | Internal function(s) |
haplotypes-package | Manipulating DNA Sequences and Estimating Unambiguous... |
hapreord-methods | Reorders haplotypes according to the ordering factor |
homopoly-methods | Provides the list of homoplastic indels and substitutions |
image-methods | Display DNA Sequence |
indelcoder-methods | Codes gaps |
length-methods | Methods for function 'length' in the package 'haplotypes' |
names-methods | Function to get or set names of a 'Dna' object or 'Parsimnet'... |
ncol-methods | Returns the length of the longest DNA sequence |
nrow-methods | Returns the number of DNA sequences |
pairnei-methods | Provides the average number of pairwise Nei's (D) differences... |
pairPhiST-methods | Provides the pairwise PhiST between populations |
Parsimnet-class | Class '"Parsimnet"' in the Package 'haplotypes' |
parsimnet-methods | Estimates gene genealogies using statistical parsimony |
pielegend-methods | Add Legends to Plots |
pieplot-methods | Plots pie charts on statistical parsimony network |
plot-methods | Methods for function 'plot' in the package 'haplotypes' |
polymorp-methods | Displays polymorphic sites (base substitutions and indels)... |
range-methods | Returns the minimum and maximum lengths of the DNA sequences |
read.fas | Read sequences from a file in FASTA format |
remove.gaps-methods | Removing gaps from 'Dna' object |
rownames-methods | Retrieve or set the row names |
show-methods | Methods for function 'show' in the package 'haplotypes' |
subs-methods | Displays base substitutions |
tolower-methods | Convert sequence characters from upper to lower case or vice... |
unique-methods | Extract Unique Sequences |
z[-methods | Extract or replace parts of an object of class 'Dna' |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.