homopoly-methods | R Documentation |
This function returs the list of homoplastic indels and substitutions.
## S4 method for signature 'Dna'
homopoly(x,indels="sic",...)
x |
an object of class |
indels |
the indel coding method to be used. This must be one of "sic", "5th" or "missing". Any unambiguous substring can be given. See |
... |
additional arguments to |
a list with following components:
indels |
a character vector of homoplastic indels sitewise Consistency Index, names of the character vector gives the site of homoplastic indel. |
subs |
a character vector of homoplastic substitutions sitewise Consistency Index, names of the character vector gives the site of substitution. |
signature(x = "Dna")
Caner Aktas, caktas.aca@gmail.com
data("dna.obj")
### Method for signature 'Dna'.
x<-dna.obj
homopoly(x)
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