allelefreqs: Estimates allele frequencies
In hapsim: Haplotype Data Simulation
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Estimates allele frequencies from a binary matrix
Usage
1
allelefreqs(dat)
Arguments
dat
A binary matrix, rows are haplotypes and columns are binary markers
Value
A list containing:
freqs
Vector of allele "0" frequencies
all.polym
If TRUE, all loci are polymorphic
non.polym
Vector of non-polymorphic loci, if any
Author(s)
Giovanni Montana
References
Montana, G. HapSim: a simulation tool for generating haplotype data with
pre-specified allele frequencies and LD coefficients. 2005.
Examples
1
2
3
data(ACEdata)
x <- allelefreqs(ACEdata)
hist(x$freqs)
hapsim documentation built on May 1, 2019, 9:11 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Estimates allele frequencies from a binary matrix
Usage
1 | allelefreqs(dat)
|
Arguments
dat |
A binary matrix, rows are haplotypes and columns are binary markers |
Value
A list containing:
freqs |
Vector of allele "0" frequencies |
all.polym |
If TRUE, all loci are polymorphic |
non.polym |
Vector of non-polymorphic loci, if any |
Author(s)
Giovanni Montana
References
Montana, G. HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients. 2005.
Examples
1 2 3 | data(ACEdata)
x <- allelefreqs(ACEdata)
hist(x$freqs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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