Description Usage Arguments Value Author(s) References See Also Examples
Creates an haplotype data object needed for simulating haplotypes with haplosim
. This object also contains some summary statistics about the real data.
1 | haplodata(dat)
|
dat |
A binary matrix, rows are haplotypes and columns are binary markers |
A list containing:
freqs |
Allele frequencies |
cor |
Correlation matrix (LD coefficients) |
div |
Locus-specific diversity measure |
cov |
Covariance matrix for the normal distribution |
Giovanni Montana
Montana, G. HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients. 2005.
See also haplosim
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