harmony: Harmony: fast, accurate, and robust single cell integration.

In harmony: Fast, Sensitive, and Accurate Integration of Single Cell Data

Harmony: fast, accurate, and robust single cell integration.

Description

Algorithm for single cell integration.

Usage

?RunHarmony to run Harmony on cell embeddings matrix, Seurat or SingleCellExperiment objects.

Useful links

1. Report bugs at https://github.com/immunogenomics/harmony/issues

2. Read the manuscript \Sexpr[results=rd]{tools:::Rd_expr_doi("10.64898/2026.03.16.711825")}

Author(s)

Maintainer: Ilya Korsunsky [e-mail] (ORCID)

Authors:

• Nikolaos Patikas [e-mail] (ORCID) [contributor]

• Hongcheng Yao [e-mail] (ORCID) [contributor]

• Martin Hemberg [e-mail] (ORCID)

• Nghia Millard [e-mail] (ORCID)

• Jean Fan [e-mail] (ORCID) [contributor]

• Kamil Slowikowski [e-mail] (ORCID) [contributor]

• Soumya Raychaudhuri (ORCID)

Other contributors:

• Miles Smith [contributor]

See Also

Useful links:

• https://github.com/immunogenomics/harmony

• https://pati-ni.github.io/harmony/

harmony documentation built on April 25, 2026, 9:06 a.m.