RunHarmony | R Documentation |
RunHarmony is generic function that runs the main Harmony
algorithm. If working with single cell R objects, please refer to
the documentation of the appropriate generic API:
(RunHarmony.Seurat()
or RunHarmony.SingleCellExperiment()
). If
users work with other forms of cell embeddings, the can pass them
directly to harmony using RunHarmony.default()
API. All the
function arguments listed here are common in all RunHarmony
interfaces.
RunHarmony(...)
... |
Arguments passed on to
|
If used with single-cell objects, it will return the
updated single-sell object. For standalone operation, it
returns the corrected cell embeddings or the R6 harmony object
(see RunHarmony.default()
).
Other RunHarmony:
RunHarmony.Seurat()
,
RunHarmony.SingleCellExperiment()
,
RunHarmony.default()
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