A package for building hierarchical block matrices from association matrices and for performing multi-scale analysis. It specifically targets chromatin contact maps, generated from high-throughput chromosome conformation capture data, such as 5C and Hi-C, and provides methods for detecting movements and for computing chain hierarchy and region communicability across scales.
|Date of publication||2015-02-01 19:50:29|
|Maintainer||Yoli Shavit <email@example.com>|
|License||GPL (>= 2)|
add.noise: Add Noise to a Symmetric Association Matrix
communicability: Compute Communicability between Nodes in an HBM
detect.movement: Detect Movements Between Association Matrices using their...
generate.random.conf: Generate a Random Chain Configuration
get.movements: Summarize Detected Movements
hbm: Build a Hierarchical Block Matrix (HBM)
hbm.features: Compute Robust Features in an HBM
hbm-package: Hierarchical Block Matrix Analysis
hierarchy: Compute Hierarchy of an HBM
mcl: Markov Clustering
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